Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 385 6e-102 seq26 316 3e-81 seq87 221 2e-52 seq9 188 9e-43 seq42 181 1e-40 seq73 113 6e-20 seq61 102 1e-16 seq4671 84.2 3e-11 >seq4 Length=96435083 Score = 385 bits (426), Expect = 6e-102 Identities = 647/927 (70%), Gaps = 17/927 (2%) Strand=Plus/Plus Query 32962 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGG 33018 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 || || ||||| || || || || || || || |||||||| | ||| |||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 33079 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33138 || ||||| ||||| || || |||| || | || || | || || | || Sbjct 65463977 AAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTG 65464036 Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198 ||||| |||||||| || || ||||||| | || ||||| || || || || || Sbjct 65464037 TCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCACA 65464096 Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258 || || ||| | || ||||| || || || | || || | | ||||| ||| | Sbjct 65464097 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGT---TGATAAT-GATTTC 65464152 Query 33259 ACGGTTTCTTCACTC-GGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | |||| ||| || || | | | | || | ||||||| || || || Sbjct 65464153 TTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGCA 65464212 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||| | |||||| ||||| ||||| || |||||||||||||| || || ||||| || Sbjct 65464213 ACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAG 65464272 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || || || || ||||| ||||| || | || || ||||| |||| ||| ||||| || Sbjct 65464273 TCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCAC 65464332 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTA-TCCACTTTT 33490 ||||||||||| | || || |||||||| | | | |||| | |||| Sbjct 65464333 AGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGCA 65464392 Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550 | ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| | Sbjct 65464393 GGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATT 65464452 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG-A 33609 | || || |||||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 65464453 CCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTT 65464512 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 |||||||| ||||| || || || || |||||||| | ||||| |||| ||| |||||| Sbjct 65464513 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 65464572 Query 33670 GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 33729 | || || ||| ||| |||||||| ||||| || ||||| || ||||| || ||| Sbjct 65464573 TGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCC 65464632 Query 33730 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 33789 | || || |||||||| | | ||||| ||| | || | ||| | | ||||| Sbjct 65464633 AGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCC 65464692 Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || || | || || || || | ||||| || || ||||| || || || ||||| | | Sbjct 65464693 TTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGC 65464752 Query 33850 CAGATGTCATAATATTGGATTGGGAAA 33876 ||||| |||| |||| || ||||||| Sbjct 65464753 CAGATATCATGGTATTCGA-TGGGAAA 65464778 >seq26 Length=66536344 Score = 316 bits (350), Expect = 3e-81 Identities = 633/927 (68%), Gaps = 22/927 (2%) Strand=Plus/Plus Query 32962 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGG 33018 |||||| |||| || | |||| ||| ||| || | || || || |||| | || Sbjct 31519072 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCACCTCCATCCTCTGA 31519131 Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 || |||||||| || || || | || || || || ||||| | ||| |||||||||| | Sbjct 31519132 TACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACG 31519191 Query 33079 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33138 || ||||| ||||| || || |||| || | || || | || || | | Sbjct 31519192 AAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCCAGCATAAGCGTG 31519251 Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198 || || |||||||| || || ||||| | || ||||| | || || || || Sbjct 31519252 TCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACA 31519311 Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258 || || ||| | || ||||| | || | || || || | | ||||| ||| | Sbjct 31519312 GGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGT---TGATAAT-GATTTC 31519367 Query 33259 ACGGTTTCTTCACTC-GGTGGAT-GC--AATAAATGTTTAAACATCAAACATGCGAAATC 33314 | |||| ||| || || | || | | || | ||||||| || || || | Sbjct 31519368 TTGTACTCTTTGCTCTGGCGGCTTGCTTACCAGGTGCCTGAACATCAGGCAGGCAAAGCC 31519427 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||| | || ||| ||||| ||||| || || |||||||| || || || ||||| || Sbjct 31519428 ACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCAG 31519487 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || | || || ||||| ||||| || || || || ||||| |||||||| ||||||| Sbjct 31519488 TCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTAC 31519547 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT----ATCCACTTTT 33490 ||||||||||| | || ||| |||||||| | | | | | ||||| Sbjct 31519548 AGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAATCCAACGCA 31519607 Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550 | ||||| || |||| |||||| ||||||||||| || || || ||||| |||||||| | Sbjct 31519608 GGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATT 31519667 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33610 | || || |||||||| || || || | ||||| |||||||| ||||| Sbjct 31519668 CCCTCTCTTTGGAATCTTTAAT----GTGTCAATGAGGAGACTGTACATTTCAGAATGTT 31519723 Query 33611 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 33670 ||||||| ||||| || || || || |||||||| | ||||| |||| ||| |||||| Sbjct 31519724 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTT 31519783 Query 33671 TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 | ||| || ||| ||| |||||||| ||||| || |||||||||||||| || |||| Sbjct 31519784 GGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAAGCCA 31519843 Query 33731 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG-ATATCT 33789 || || |||||||| | | ||||| ||| | || |||| | ||| ||||| Sbjct 31519844 GGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAG-CGCTTCCTAGTGTTGAATATCC 31519902 Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || || | || || || || ||||||| || | ||||| || || || ||||| | | Sbjct 31519903 TTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACATCTGC 31519962 Query 33850 CAGATGTCATAATATTGGATTGGGAAA 33876 ||||| |||| |||| | ||||||| Sbjct 31519963 CAGATATCATGGTATT-CAATGGGAAA 31519988 >seq87 Length=2570995 Score = 221 bits (244), Expect = 2e-52 Identities = 344/490 (70%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 33389 GCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 |||| ||||| || | || || ||||| |||||||| |||||||| |||||||||| | Sbjct 1819200 GCCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA 1819259 Query 33449 TAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 33505 || || |||||||| | | | |||| ||||| | | ||| ||||||| Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 33506 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 33565 ||||||| ||||||||||| || || || ||||| | ||||| | | || || || Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 33566 CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33625 |||||| || || | || | ||||| |||||||| ||||| |||||||| ||||| | Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 33626 TCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCG 33685 | || || || |||||||| || ||||| |||| ||| |||||| | ||| | || Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| ||||||||| |||| ||| ||||| | |||| || |||| || || ||||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 ||| | | ||||| ||| | || | ||| | | ||||| || || | || || | Sbjct 1819560 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 1819619 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 | || | |||| || || ||||| || || || ||| | | |||||| |||| || | Sbjct 1819620 CCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACT 1819678 Query 33866 GGATTGGGAA 33875 ||| || || Sbjct 1819679 CGATAGGAAA 1819688 >seq9 Length=86001432 Score = 188 bits (208), Expect = 9e-43 Identities = 405/598 (68%), Gaps = 18/598 (3%) Strand=Plus/Plus Query 32962 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGG 33018 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 36369702 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 36369761 Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 || | ||||| || || || || || || || || ||||| | ||| |||||||||||| Sbjct 36369762 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 36369821 Query 33079 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33138 | ||||||||||| || || |||| || | ||||| | || || | || Sbjct 36369822 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 36369881 Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198 ||||| |||||||| || || ||||||| || | || || || || || || Sbjct 36369882 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 36369941 Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258 || || ||| | || ||||| || || || || || || | | || || ||| | Sbjct 36369942 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACTGCGT---TGATGAT-GATTTC 36369997 Query 33259 ACGGTTTCTTCACTC-GGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | |||| ||| || || | | | | || | ||||||| || || || || Sbjct 36369998 TTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGTC 36370057 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||| | |||||| ||||| ||||| || |||||||||||||| || || ||||| || Sbjct 36370058 ACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAG 36370117 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || | || | ||||| ||||| || || || || |||| ||||||| ||||| | Sbjct 36370118 TCCCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCCAG---AGAAGATCCCTTCCAT 36370174 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 33491 ||||||||||| | || || |||||||| | | | |||| ||||| | Sbjct 36370175 AGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCAG 36370234 Query 33492 AGCCCAATCGGCCTTCTTTTT-TACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||| || ||||||||||| ||||||||||| || || || ||||| ||||| || Sbjct 36370235 GGCCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATTGAAGAGCTA 36370292 >seq42 Length=9663327 Score = 181 bits (200), Expect = 1e-40 Identities = 347/507 (68%), Gaps = 11/507 (2%) Strand=Plus/Minus Query 32962 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGG 33018 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 3436142 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3436083 Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 || | ||||| || || || || || || || || ||||| | ||| |||||||||||| Sbjct 3436082 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3436023 Query 33079 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33138 | ||||||||||| || || |||| || | ||||| | || || | || Sbjct 3436022 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 3435963 Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198 ||||| |||||||| || || ||||||| || | || || || || || || Sbjct 3435962 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 3435903 Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258 || || ||| | || ||||| || || || || | || | | ||||| ||| | Sbjct 3435902 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAGGCGT---TGATAAT-GATTTC 3435847 Query 33259 ACGGTTTCTTCACTC-GGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | |||| ||| || || | | | | || | ||||||| || || || || Sbjct 3435846 TTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGTC 3435787 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||| | |||||| ||||| ||||| || |||||||||||||| || || ||||| || Sbjct 3435786 ACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAG 3435727 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || || || || ||||| ||||| || || || || ||||| |||||||| ||||| || Sbjct 3435726 TCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCAC 3435667 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCC 33461 ||||||||||| | || || ||||| Sbjct 3435666 AGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 158 bits (174), Expect = 2e-33 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| | Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 | || || |||||||| ||||||||||| | ||||| |||||||| ||||| ||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 ||||| ||||| || || || || |||||||| | ||||| |||| ||| |||||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGG 3435298 Query 33673 CAAAATCGTTCCGCC 33687 | ||| || ||| || Sbjct 3435297 CTAAAGCGCTCCACC 3435283 Score = 149 bits (164), Expect = 8e-31 Identities = 133/167 (80%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| | Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 | || || |||||||| ||||||||||| | ||||| |||||||| ||||| ||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||||| ||||| || || || || |||||||| | ||||| ||||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAAT 3436197 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| || |||||||||||||| || || ||||| || || || || | Sbjct 3436661 CCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 3436602 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || ||||| |||||||| ||||| || |||||||||| Sbjct 3436601 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 3436542 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||||| Sbjct 3436541 CCACAACTCGTTCTCC 3436526 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 32962 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGG 33018 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 3438637 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3438578 Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 || || ||||| || || || || || || || || ||||| | ||| |||||||||||| Sbjct 3438577 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3438518 Query 33079 AAATCAAACGGATT 33092 || ||||||||||| Sbjct 3438517 AAGTCAAACGGATT 3438504 >seq73 Length=3316092 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2397345 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2397286 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2397285 GATTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2397226 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 2397225 CTGTTTCTTATACCATA 2397209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 2391265 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 2391206 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || || ||||| ||||| || | || |||||| | | || || ||||||| Sbjct 2391205 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAATGCCA 2391146 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 2391145 AGGCTCCAGGTAAATAGC 2391128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 2400521 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 2400462 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || |||||||| ||||| || || || || || ||||| || | | |||| Sbjct 2400461 TTAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 2400402 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 2400401 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 2400351 >seq61 Length=4506808 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || ||||| || || || |||||||||||||| ||||| | ||| || Sbjct 586187 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 586128 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||| || || | ||| ||||| ||||| ||||| | ||||| || ||||||||||| Sbjct 586127 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 586068 Query 33448 ATAAGTCTCTCTCC 33461 | | |||||| || Sbjct 586067 ACCACTCTCTCCCC 586054 >seq4671 Length=1285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||||||||| | ||||| |||||||| ||||| |||||||| ||||| Sbjct 1203 ATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGC 1262 Query 33624 CATCTGAAATCCGTAGAAACA 33644 || || || || |||||||| Sbjct 1263 AATTTGGAAGCCATAGAAACA 1283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622897870368600