Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq7 105 6e-18 >seq7 Length=85103860 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| ||||| |||||||| || | |||||| | || | || | | Sbjct 11187929 AATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 11187988 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| |||||| ||||| ||||| || || || || || Sbjct 11187989 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 11188048 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | | |||||||| || ||||||| | | | | |||||| || Sbjct 11188049 GCAGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 11188108 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| || || | || ||||||||| | || || || || Sbjct 11188109 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 11188156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478624495921200