Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq26 134 4e-26 seq8 107 5e-18 seq73 96.9 9e-15 seq42 95.1 3e-14 seq4 95.1 3e-14 seq22 84.2 6e-11 >seq26 Length=66536344 Score = 134 bits (148), Expect = 4e-26 Identities = 398/608 (65%), Gaps = 12/608 (2%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || |||||||| || ||| | |||||||| || | || ||| | |||||| Sbjct 25930102 TTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGCGTTTTGGAGGAATTGCTGTGG 25930043 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| |||||||| || ||||| | | ||| || | ||| |||||| Sbjct 25930042 TTTATCAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATCTGGGAT 25929983 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGTC--GACAACGAAGAAGGT 111491 | ||||| || || || ||||| || ||| ||| || || || || | ||||| Sbjct 25929982 GCCAATGGGTCCCGAGATTTTCTGGA--CAGCCTGGGATTCTCTGCACGAC-AGGAAGGG 25929926 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATG 111551 ||||| || |||||||| || || || ||| | || ||||| |||||||||||| ||| Sbjct 25929925 GATCTGGGCCCAGTTTATGGTTTCCAGTGGAGACATTTTGGCGCAGACTACAAAGATATG 25929866 Query 111552 CACGACTCATATGATTC---ACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATT 111608 || ||| || | || || ||| || || | || || || ||||| || Sbjct 25929865 ---GAATCAGATTACTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATC 25929809 Query 111609 AAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAA 111668 || | || ||| | | | || || ||| |||| ||||||||||| | | Sbjct 25929808 AAAACCAGCCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCC 25929749 Query 111669 AAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 |||||||| || || || ||| | || || || |||||| | ||| ||| Sbjct 25929748 CTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAATGGGGAGCTG 25929689 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 || ||||| | || ||| | || | ||||| || || ||||| || || || ||||| Sbjct 25929688 TCTTGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCCTTCAACATTGCC 25929629 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTC 111848 || || || || ||||| | | | || || || ||| || || || || || || Sbjct 25929628 AGCTATGCCCTGCTTACCTACATGATTGCACACACCACAGGCCTAAAGCCAGGGGATTTT 25929569 Query 111849 ATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAG 111908 | ||| | |||||||| ||| ||||| || || || || | || |||| ||| Sbjct 25929568 GTCCACACCTTGGGAGATGCACATATTTACCTGAATCATATCGAGCCCCTGAAAATTCAG 25929509 Query 111909 TTGAAGCG 111916 | |||| Sbjct 25929508 CTTCAGCG 25929501 >seq8 Length=88571779 Score = 107 bits (118), Expect = 5e-18 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || |||||||| || ||| | |||||||| || | || ||| | |||||| Sbjct 15948778 TTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGCGTTTTGGAGGAATTGCTGTGG 15948719 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| |||||||| || ||||| | | ||| || | ||| |||||| Sbjct 15948718 TTTATCAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATCTGGGAT 15948659 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGTC--GACAACGAAGAAGGT 111491 | ||||| || || || ||||| || ||| ||| || || || || | ||||| Sbjct 15948658 GCCAATGGGTCCCGAGATTTTCTGGA--CAGCCTGGGATTCTCTGCACGAC-AGGAAGGG 15948602 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 ||||| || |||||||| || || || ||| | || ||||| |||||||||||| Sbjct 15948601 GATCTGGGCCCAGTTTATGGTTTCCAGTGGAGACATTTTGGCGCAGACTACAAA 15948548 >seq73 Length=3316092 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || || |||| ||||| || || || || ||| Sbjct 2392804 GCTCAGCAGCTTTGGTACGCCATCATTGAGTCTCAGACAGAGACGGGCACCCCATACATG 2392863 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 2392864 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGCACCATAAAATGC 2392923 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||||||||| || || | || || ||| Sbjct 2392924 AGCAACCTATGTACAGAAATAGTAGAGTATACC 2392956 >seq42 Length=9663327 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 ||||| || | || ||||||| || ||||| || ||||| ||||| | ||||| | | Sbjct 3435643 GAACGAGTTGTGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTC-TTTTGCGTC 3435701 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 ||| || ||||| || ||||| | | | ||||| || || |||||||| || ||| | || Sbjct 3435702 AATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTAT 3435761 Query 22608 TAGCCGAGATGAGGGT 22623 |||| ||||||||||| Sbjct 3435762 TAGCAGAGATGAGGGT 3435777 >seq4 Length=96435083 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT----GAACAATGAACGTTCATTCGCGGA 22490 || || ||||| || ||||| ||| ||||| | |||| ||| | | | | || Sbjct 65464414 AAAAAGAAGGCCGACTGGGCCCTGCGTTGGATTGGGGGACAAAGAAGCTACCTATGGAGA 65464355 Query 22491 ACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAA 22549 ||| || | || ||||||| || ||||| || |||| ||||| | ||| ||| ||| Sbjct 65464354 ACGAGTTGTGGCCTTTGCTGCTGTGGAAGGGATCCTCTTCTCTGGCTCCTTT-GTGTCAA 65464296 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 | || ||||| || ||||| | | | ||||| || || |||||||| || ||| | |||| Sbjct 65464295 TATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTA 65464236 Query 22610 GCCGAGATGAGGGT 22623 || ||||||||||| Sbjct 65464235 GCAGAGATGAGGGT 65464222 >seq22 Length=61813736 Score = 84.2 bits (92), Expect = 6e-11 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTT-CTGTG 111373 ||| | || |||||||| || ||| | | |||||| || | |||| | || ||||| Sbjct 17834155 TTTTCTCTGCTCACAACCAAACGAGTGTTCTAGAAGGGTGTTTT-GAAGGAGTTGCTGTG 17834097 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 |||||| ||| | |||||||| || ||||| | | ||| || | ||| ||||| Sbjct 17834096 GTTTATCAAAGGATGCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATCTGGGA 17834037 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGTC--GACAACGAAGAAGG 111490 || ||||| || || | ||||| || ||| ||| || || || || | ||||| Sbjct 17834036 TGCCAATGGGTCCCGAGTTTTTCTGGA--CAGCATGGGATTCTCTGCACGAC-AGGAAGG 17833980 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 || || || |||||||| || || || ||| | || ||| | |||||||||||| Sbjct 17833979 GGACCTGGGCCCAGTTTATGGTTTCCAGTGGAGACATTTTTGAGCAGACTACAAA 17833925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303247810453970