Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq33 86.0 5e-12 seq17 86.0 5e-12 >seq33 Length=41749222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || || |||||||||||||| || |||| || || Sbjct 34672402 ATGCAGATTTTCGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 34672343 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| | | | | || || || || ||||| ||||| | || ||||||| Sbjct 34672342 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 34672283 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | || ||||| || | ||||||| | || || | || || ||| Sbjct 34672282 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 34672223 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| ||||| || | ||| ||||||||||| | || || || Sbjct 34672222 ATCCAAAAGGAGTCCACCCTTCATTTGGTGTTGAGACTTCGTGGTGG 34672176 >seq17 Length=65020687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || || || ||||||||||| || |||| || | Sbjct 35302384 ATGCAGATTTTCGTGAAGACCCTTACAGGAAAAACCATCACGCTCGAGGTTGAACTCTCG 35302325 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| | | | | || ||| || || ||||| ||||| | || ||||||| Sbjct 35302324 GACACTATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 35302265 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| ||||| || | ||||||||| || || | || || ||| Sbjct 35302264 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGACCGTACTTTGTCTGACTACAAC 35302205 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| ||||| | | ||| ||||||||||| | || || || Sbjct 35302204 ATCCAAAAGGAGTCCATCCTTCATTTGGTGTTGAGACTTCGTGGTGG 35302158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425311160120200