Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq13 114 9e-21 seq10 113 3e-20 seq33 100 2e-16 seq38 96.9 2e-15 seq17 96.9 2e-15 seq9 91.5 1e-13 seq233 89.7 3e-13 seq7 86.0 4e-12 >seq13 Length=46045664 Score = 114 bits (126), Expect = 9e-21 Identities = 80/91 (88%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 ||||||||||||||||||||||||| |||||||| ||||| || ||||| ||| || Sbjct 30512608 CCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTTGTTCAT 30512549 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||||||||||||||||||||||||| Sbjct 30512548 CCATTCATGCGCGTCACTAATTAGATGACGA 30512518 >seq10 Length=37003552 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||||||||||||| |||||| | || || || |||||||| Sbjct 22765482 AAGGCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTGGGTATGGACAGTGGAAATCTCGT 22765541 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 22765542 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 22765576 >seq33 Length=41749222 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||||||||||||| ||| ||||||||| || ||||| ||||||||| ||| | || Sbjct 34672190 CAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 34672249 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || || || || || | || ||||| | || | ||||| || || Sbjct 34672250 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 34672309 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| || |||||| || | || || || Sbjct 34672310 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 34672369 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| | ||| |||||||| |||||||| Sbjct 34672370 TTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq38 Length=14253900 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 || |||||||||||| ||| ||||||||| || ||||| ||||||||| ||| | || Sbjct 298697 CAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 298756 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || || Sbjct 298757 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 298816 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| || |||||| || || || || || Sbjct 298817 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATGGT 298876 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||| | | ||| || ||||| |||||||| Sbjct 298877 TTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq17 Length=65020687 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||||||||||||| || ||||||||| || ||||| ||||||||| ||| || || Sbjct 35302172 CAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCATC 35302231 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || || Sbjct 35302232 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 35302291 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || || ||||| | | ||| || |||||| || | || || || Sbjct 35302292 CTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATGGT 35302351 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || | ||| |||||||| |||||||| Sbjct 35302352 TTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq9 Length=86001432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||||||||||||| ||| ||||||||| || ||||| ||||||||| ||| | || Sbjct 39797603 CAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 39797544 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || | Sbjct 39797543 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTACC 39797484 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| || |||||| || | | || || Sbjct 39797483 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGGGATGGT 39797424 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||| | | ||| |||||||| |||||||| Sbjct 39797423 TTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq233 Length=141111 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||| || |||||||||||| |||| |||||| Sbjct 7861 CTCTCTCTTCAAAGTTCTTTTCAACTTTCACTTACGGTACTTGTTGACTATTGGTCTCCT 7920 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 7921 GCCGGTATTTAGCCTTA 7937 >seq7 Length=85103860 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | |||| |||| || || ||| ||| || || || ||||| || ||| Sbjct 11188156 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 11188097 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| || ||||| || || | || || || | |||| Sbjct 11188096 AGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11188037 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || ||| ||| ||||||| || || || | || || Sbjct 11188036 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 11187977 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || ||||| || ||||||||||| || |||||||| Sbjct 11187976 TCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 11187930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334921339459385