Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 259 5e-64 seq26 232 7e-56 seq87 185 1e-41 seq42 120 3e-22 >seq4 Length=96435083 Score = 259 bits (286), Expect = 5e-64 Identities = 508/746 (68%), Gaps = 4/746 (1%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || || ||||| |||||||| ||||| | || ||||| || | || Sbjct 65464034 CTGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTC 65464093 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 ||||| || || || || | || || | ||| | || || | | | ||||||| Sbjct 65464094 ACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGTTGATAATGATTTCT 65464153 Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 |||||| | || || || ||||| | | || |||| | ||| |||||| Sbjct 65464154 TGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGCAA 65464213 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAG 93162 |||||||| || |||| || || || ||| ||| || || | || || | ||| Sbjct 65464214 CAGTGTAAACCCTCATCTC-TGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAG 65464272 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 ||| |||||||||||||| |||||||| |||| ||||| || | || |||||||| Sbjct 65464273 TCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCAC 65464332 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTA 93281 || ||||| ||||||| ||||| || | | || || | | ||||| | Sbjct 65464333 AGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGCA 65464392 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAAT 93341 ||||| ||||| || || || | |||||| | ||| || ||||| || || || || | Sbjct 65464393 GGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATT 65464452 Query 93342 CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG- 93400 | | ||| | |||||| ||||| |||||||| | ||| |||||||||||||| Sbjct 65464453 CCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTT 65464512 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | || ||||| ||||||||||| || |||||||| | || || || | ||| |||||| Sbjct 65464513 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 65464572 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 || || | ||| || || |||||||||||||| ||||| || ||||| |||||| Sbjct 65464573 TGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCC 65464632 Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580 | | || |||||||||| |||| || ||| ||| ||||| | | ||| Sbjct 65464633 AGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCC 65464692 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || || ||||| || || | ||||| || || || || ||||| |||||||| | | Sbjct 65464693 TTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGC 65464752 Query 93641 CATATGTCTTGATATTGAATTGGAAA 93666 || || || || |||| || ||||| Sbjct 65464753 CAGATATCATGGTATTCGATGGGAAA 65464778 >seq26 Length=66536344 Score = 232 bits (256), Expect = 7e-56 Identities = 431/627 (69%), Gaps = 7/627 (1%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTG 93139 || |||| | ||| |||||| | ||||||| || |||| || || || ||| ||| Sbjct 31519406 TGAACATCAGGCAGGCAAAGCCACAGTGTAAACGCTCATCTC-TGCTAATAAGCTCTTTG 31519464 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||||| | || || | |||||| ||||||||||||| |||||||| |||||| Sbjct 31519465 GAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAG 31519524 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || |||| || || ||||| ||||||| | ||| || | | | Sbjct 31519525 CCAGAGAAGAAGATGTCTTCTACAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTC 31519584 Query 93260 GAATTA-CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || || | ||||| | ||||| || || | || || | |||||| | ||| Sbjct 31519585 TTTTTGTCTCCAAATCCAACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGT 31519644 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 || ||||| || || || || || | ||| | |||||| || |||| || || | Sbjct 31519645 CTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTT-TA---ATGTGTCAATGAG 31519700 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| | Sbjct 31519701 GAGACTGTACATTTCAGAATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCG 31519760 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || || | ||| |||||||| ||| | ||| || || |||||||||||||| || Sbjct 31519761 GGCCTCTGTAACCTGAACTTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCC 31519820 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||| |||||||| ||||||| | || |||||||||| |||| ||| ||| || Sbjct 31519821 ATCACTGGCTGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAG 31519880 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 | ||| | | | ||| || || || || || || || | ||||| || | || Sbjct 31519881 CGCTTCCTAGTGTTGAATATCCTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGC 31519940 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 || ||||| |||||||| | ||| || || || |||| ||| ||||| | || || | Sbjct 31519941 CTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACGAAGTG 31520000 Query 93679 ATTAGGGTTATCTTTTAGTAACGGCTC 93705 | | || ||| | ||||| ||||| Sbjct 31520001 GTGGCGATTTTCTCTCAGTAAGGGCTC 31520027 >seq87 Length=2570995 Score = 185 bits (204), Expect = 1e-41 Identities = 359/529 (68%), Gaps = 1/529 (0%) Strand=Plus/Plus Query 93177 GCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCA 93236 |||| |||||||| ||||| ||||| || || || ||||| || || ||||| | || Sbjct 1819200 GCCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA 1819259 Query 93237 CAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTT 93296 ||| ||||| || | | || || | ||||| | | | ||| ||||| | Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 93297 TTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAAT 93356 | || || | |||||| | ||| || ||||| || | || || || | ||| | |||| Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 93357 CTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAA 93416 || ||||| || | || | ||| |||||||||||||| | || ||||| |||| Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 93417 TTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA 93476 ||||||| || |||||||| || || || || | ||| |||||||| ||| | ||| | Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 93477 CGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAA 93536 | |||||||||||||||| ||||| | |||| ||||||| | || ||||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 93537 AATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTT 93596 ||||| |||| || ||| ||| ||||| | | ||| || || || || || | Sbjct 1819560 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 1819619 Query 93597 CTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATT 93656 | || | |||| || || || || ||||| |||||| | | ||| || || || || | Sbjct 1819620 CCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACT 1819678 Query 93657 GAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || ||||| | | || || || || ||| | ||||| ||||| Sbjct 1819679 CGATAGGAAAGACAAGGAAGCGGCGGGGATTTTCTCTCAGTAAGGGCTC 1819727 >seq42 Length=9663327 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||||| ||||| || || || | |||||| | ||| || ||||| || || || || || Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 93344 CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACA 93403 | ||| | |||||| ||||| |||||||| | ||| |||||||||||||| | Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||| ||||||||||| || |||||||| | || || || | ||| |||||||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTG 3435299 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||||| |||||| | || || || ||||| | | || |||| | ||| || Sbjct 3435852 GATTTCTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGC 3435793 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTG 93155 |||||| |||||||| || |||| || || || ||| ||| || || | || | Sbjct 3435792 AAAGTCACAGTGTAAACCCTCATCTC-TGCTAATAAGCTCGTTGGAAAACGTAAGGCCAG 3435734 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | |||||| |||||||||||||| |||||||| |||||| ||||| || || || | Sbjct 3435733 GCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCC 3435674 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||||| || ||||| ||||||| ||||| Sbjct 3435673 CTTCCACAGCAGCAAAGGCCACAACTCGTTC 3435643 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||||| ||||| || || || | |||||| | ||| || ||||| || || || || || Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 93344 CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACA 93403 | ||| | |||||| ||||| |||||||| | ||| |||||||||||||| | Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 || ||||| ||||||||||| || |||||||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACA 3436212 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 93476 ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATA 93535 || || |||||||||||||| ||||| || ||||| ||||||| | || |||| Sbjct 3434567 ACCAGGTTTTCATTGACTATGCCATCACTAGCCGCAAAGAAAGCCAGGACGTGAGATATA 3434508 Query 93536 AAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACT 93595 |||||| |||| || ||| ||| ||||| | | ||| || || || ||||| Sbjct 3434507 AAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACC 3434448 Query 93596 TCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATAT 93655 || || | ||||| || || || || ||||| |||||||| | ||| || || || ||| Sbjct 3434447 TCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTAT 3434388 Query 93656 TGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | || ||||| | || || || || || ||| | ||||| ||||| Sbjct 3434387 TCGATGGGAAAGACCACGAAGCGGCGGGGATTTTCTCTCAGTAAGGGCTC 3434338 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | |||||| |||||||||||||| |||||||| |||||| ||||| || || Sbjct 3436623 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAG 3436564 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || |||||||| || ||||| ||||||| ||||| Sbjct 3436563 ATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTC 3436529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556816703585400