Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq40 109 5e-19 seq7 98.7 8e-16 >seq2 Length=98408828 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 12204190 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 12204249 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || || |||||||||||||| || || || || Sbjct 12204250 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 12204309 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||||||| | || ||| ||||||| | ||||| |||||| Sbjct 12204310 CAGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 12204369 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 12204370 ATCCAGAAAGAGTCCACC 12204387 >seq40 Length=10521589 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || |||||||||| || || || Sbjct 9789933 AACATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCC 9789992 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || || |||||||| Sbjct 9789993 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 9790052 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||||||||| || | |||||| | ||| ||||| ||| Sbjct 9790053 CATCAGAGGCTGATATTTGCCGGCAAGTAGCTGGAGGATGGAGGGACCCCGTCCGACTAC 9790112 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || ||||| ||||| Sbjct 9790113 AACATCCAGAAAGAGTCCAC 9790132 >seq7 Length=85103860 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | | || || || |||| || || || || ||| Sbjct 11188157 GATGCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 11188216 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || || ||||||||||| || || || || || Sbjct 11188217 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 11188276 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| |||||| || | || ||| | ||||| | ||||| ||||| Sbjct 11188277 GCAGAGGCTGATCTTTGCAGGCAAAGAGCTGGAAGATGGCTGCACCCTGTCCGACTACAA 11188336 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 11188337 CATCCAGAAAGAGTCCACC 11188355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419695593719275