Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq33 170 4e-37 seq7 170 4e-37 seq40 167 4e-36 seq2 158 2e-33 seq38 154 3e-32 seq9 149 1e-30 seq17 143 5e-29 seq16 109 1e-18 seq113 84.2 4e-11 seq27 84.2 4e-11 >seq33 Length=41749222 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| ||||| || || |||||||| ||||||||||| || || || Sbjct 34672176 CCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 34672235 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || ||||| || || || || || || || ||| Sbjct 34672236 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 34672295 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| |||||||| || || ||||| | | ||| || Sbjct 34672296 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 34672355 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||||||||| |||||||| ||||| |||||||| Sbjct 34672356 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq7 Length=85103860 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || ||||| || || | Sbjct 11188147 AGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 11188088 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || || || || || || || || ||||| || || ||||||||| Sbjct 11188087 CCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCC 11188028 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || |||||||||||||| |||||||||||| | || || |||| |||| Sbjct 11188027 TTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTG 11187968 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || | ||| || || || ||||||||| Sbjct 11187967 ATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCATT 11187929 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || ||||| || || | Sbjct 11188375 AGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAG 11188316 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | || || || || || || || || || ||||| || || ||||| ||| Sbjct 11188315 CCATCTTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 11188256 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || |||||||||||||| |||||||||||| | || || || | |||| Sbjct 11188255 TTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTG 11188196 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | |||||||| || || |||||||| Sbjct 11188195 ATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| |||| |||| || | |||||||| Sbjct 35411308 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCATCTTCC 35411249 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||||| || ||||| || || ||||| || || || || Sbjct 35411248 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 35411189 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||| |||||||| | || || | || ||||||||| || Sbjct 35411188 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTCTTG 35411129 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| | ||| || |||||| || Sbjct 35411128 CCAGTCAGGGTCTTCATGAAGATTTGCATTTTG 35411096 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || ||||||| || ||||| || || ||||| || ||||| || ||||| |||||| Sbjct 36033220 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTG 36033279 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| |||||||||||| | || || |||| ||||||||| || || || |||||| Sbjct 36033280 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 36033339 Query 68445 TTGACGAATATCTGCATTATG 68465 || ||||| || |||||| || Sbjct 36033340 TTCACGAAGATTTGCATTCTG 36033360 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511 |||||||||| |||||||||||| ||||| || ||||||| || |||||||||||| Sbjct 49826820 GAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 49826879 Query 84512 GAGCCCCACATCGGGC 84527 ||||||||| | |||| Sbjct 49826880 GAGCCCCACGTTGGGC 49826895 >seq40 Length=10521589 Score = 167 bits (184), Expect = 4e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| |||||||| || ||||| | |||| ||||| || | || ||| ||| Sbjct 9790132 GTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAGCTACTTGCCG 9790073 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || ||||| || || || ||||||||||| ||||||||||||||||| ||||| |||||| Sbjct 9790072 GCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 9790013 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || |||||||||||| | || || || | |||||||| || || || |||||| Sbjct 9790012 ACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTC 9789953 Query 68445 TTGACGAATATCTGCAT 68461 || || || |||||||| Sbjct 9789952 TTCACAAAGATCTGCAT 9789936 >seq2 Length=98408828 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| ||||| | || |||||||| ||||||||||| || || || Sbjct 61256679 CCACCACGAAGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 61256620 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || ||||| || || || || || || || ||| Sbjct 61256619 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 61256560 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| |||||||| || || ||||| | | ||| || Sbjct 61256559 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 61256500 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| ||||| |||||||| | ||| |||||||| Sbjct 61256499 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 Score = 156 bits (172), Expect = 8e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || ||||||||||| |||||||| || ||||| || || | |||||||| | ||| || Sbjct 12204389 AGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTG 12204330 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || || || ||||| || || || || |||||||| || ||||||||| Sbjct 12204329 CCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCC 12204270 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||||||||||| | || || |||| ||||||||| || || || ||| Sbjct 12204269 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGG 12204210 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || ||||||||| Sbjct 12204209 GTCTTCACAAAGATCTGCATT 12204189 >seq38 Length=14253900 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | || ||||| || || |||||||| ||||||||||| || || || | || | Sbjct 298690 GAAGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTAC 298749 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | |||||| || || || || || || || || || || ||||| |||| Sbjct 298750 GGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTT 298809 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||| || || ||||| |||||||| || || ||||| | | ||| || || || | Sbjct 298810 CCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACG 298869 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||| ||| | |||||||| ||||| |||||||| Sbjct 298870 TGATGGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq9 Length=86001432 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| ||||| || || |||||||| ||||||||||| || || || Sbjct 39797617 CCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 39797558 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || || || || || || || || || || ||| Sbjct 39797557 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 39797498 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| | || ||||| |||||||| || || ||||| | | ||| || Sbjct 39797497 ATTCCTTCCTTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 39797438 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | ||||||||| ||| | |||||||| ||||| |||||||| Sbjct 39797437 TCGAGCGGGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq17 Length=65020687 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| ||||| || || ||||||| ||||||||||| || || || Sbjct 35302158 CCACCACGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGAC 35302217 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||| | |||||| || || || || || || || || || || ||| Sbjct 35302218 AAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 35302277 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| || ||||| || || ||||| | ||| || Sbjct 35302278 ATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACC 35302337 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||||| || |||||||| ||||| |||||||| Sbjct 35302338 TCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq16 Length=69618829 Score = 109 bits (120), Expect = 1e-18 Identities = 160/229 (70%), Gaps = 17/229 (7%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| |||| | || |||||||| ||||||||||| || || || Sbjct 24326390 CCACCACGAAGTCTCAACACCAGATAAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 24326449 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | | |||||| |||||||| || ||||| || || || || || || || ||| Sbjct 24326450 AAAGTACGGCTATCTTCCAACTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 24326509 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| |||||||| || || ||| Sbjct 24326510 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTG--------------- 24326554 Query 68415 TCCAAGGTGA--TGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||||||| ||| | |||||||| || || ||||| || Sbjct 24326555 TCCAAGTGGATGTGGTTTTCCCCATAAGGGTCTTCACAAAAATCTGTAT 24326603 >seq113 Length=1780075 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 940565 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 940624 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || |||| |||||||| || || |||||||| Sbjct 940625 AGAGTGATGGTCTTGTCCGTCAGGGTCTTCACAAAGATCTGCAT 940668 >seq27 Length=66490022 Score = 84.2 bits (92), Expect = 4e-11 Identities = 154/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA--GAGTGTCCTCCCATCTT 68310 |||| ||||| ||||||| ||| ||||| || | || ||| ||| || | |||| | Sbjct 1637604 ACCAGGTGTAAGGTGGACTATTTCTGGATATTGTCATTGGATGGAGAGT--TGCCATGCT 1637661 Query 68311 CTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTT 68370 | | ||| || | |||||| || | || |||| ||| | | ||||||||||||| Sbjct 1637662 CCATCTGTTTTCTAT-GAATATCAGCCACTGCTGGTTGGGCAGGAAACCTTCCTTGTCTT 1637720 Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT----ACTTCCAAGGTGATG 68426 ||||| ||||| || ||| ||||| | || || || ||| ||||||| Sbjct 1637721 TGATCTTGGCCTTCACATTCTCTGTGGTGACACTGGACTCAGAAGACA-CCAGGGTGATG 1637779 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || || |||||||||| | ||||||||||| | |||| Sbjct 1637780 GTCTTACCGATGAGGGTCTTCATGAATATCTGCACTCTGCT 1637820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921549419026200