Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 214 3e-50 seq26 170 4e-37 seq42 125 1e-23 seq9 118 2e-21 seq61 114 2e-20 >seq4 Length=96435083 Score = 214 bits (236), Expect = 3e-50 Identities = 578/873 (66%), Gaps = 25/873 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| |||| || |||||| ||||||||||| || || ||| |||||| || Sbjct 65464772 ATCGAATACCATGATATCTGGCAGATGTACAAGAAAGCCGAGGCTTCCTTCTGGACGGCT 65464713 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGT---CTGA-GAACGA 42400 |||||| | ||||| ||||||| | |||||| | ||| | || || || Sbjct 65464712 GAGGAGGTCGACCTCTCCAAGGATATTCAACACTGGGAAGCGCTGAAACCCGACGAGAGA 65464653 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 | || | |||| | | ||||| ||||| || || ||| |||||||||||||| Sbjct 65464652 CATTTTATATCTCA----CGTCCTGGCTTTCTTTGCTGCGAGTGATGGCATAGTCAATGA 65464597 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTAC 42518 ||||||| | |||| |||| || ||| ||| ||||| ||||| ||||| Sbjct 65464596 AAACCTGGTGGAGCGCTTCAGCCAAGAAGTTCAGGTTACA--GAGGCCCGCTGTTTCTAT 65464539 Query 42519 GGCTTCCAGATAGCCATAGAGAACGTG-CACTCTGAGGTGTACGCCAAACTGCTCAAC-- 42575 |||||||| || ||||| || ||| | || ||||| ||||| | || |||| | Sbjct 65464538 GGCTTCCAAATTGCCATGGAAAACATAACATTCTGAAATGTAC---AGTCTCCTCATCGA 65464482 Query 42576 -ACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || ||||| ||| || ||| | | || ||||| || || ||||| ||||| Sbjct 65464481 TACTTACATTAAAGATTCCAAAGAGAGGGAATATCTCTTCAATGCTATTGAGACAATGCC 65464422 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC-GACGCAACGT 42693 || | || |||||||| |||||||| || ||||| | | | | || || || | Sbjct 65464421 TTGTGTGAAAAAGAAGGCCGACTGGGCCCTGCGTTGGATTGGGGGACAAAGAAGCTACCT 65464362 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 || || | | || |||||| | || || || || ||| ||||||| ||| |||| | Sbjct 65464361 ATGGAGAACGAGTTGTGGCCTTTGCTGCTGTGGAAGGGATCCTCTTCTCTGGCTCCTTTG 65464302 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAA 42812 || || |||||||||||| | | || | | |||||| || || || || || ||||| Sbjct 65464301 TGTCAATATTCTGGCTCAAGAA-ACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAG 65464243 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || || ||||| || ||||| | || | |||||||||||| ||||| || ||| Sbjct 65464242 CTTATTAGCAGAGATGAGGGTTTACACTGTTGCTTTGCCTGCCTGATGTTC---AGGCAC 65464186 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || |||||||| || || | | || | | ||||| | | || ||| | | Sbjct 65464185 CTGGTACACAAGCCGCCGGAGCAAAGAGTACAAGAAATCATTATCAACGCAGTGAGGCTA 65464126 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| ||||||| |||||| || | ||||| ||| || |||| |||||| || ||| Sbjct 65464125 GAGCAGGAGTTTCTCACGGAGGCCCTGCCTGTGAAGCTCATCGGGATGAACTGCGCCCTG 65464066 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC 43052 ||| |||||||| | | ||| || ||| || || || | || ||||| Sbjct 65464065 ATGAAGCAGTACATCGAATTCGTGGCGGACAGGCTTATGCTGGAGCTAGGGTTCAGCAAG 65464006 Query 43053 CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 | | ||| || || ||||| ||||| || || || | || || ||||| Sbjct 65464005 ATTTTCAAAGTAGAAAATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACA 65463946 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| || |||||||| || | ||| || ||| Sbjct 65463945 AACTTCTTTGAGAAGCGAGTGGGCGAGTATCAG 65463913 >seq26 Length=66536344 Score = 170 bits (188), Expect = 4e-37 Identities = 489/741 (66%), Gaps = 26/741 (4%) Strand=Plus/Minus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 |||| || |||||| ||||||||||| || || || | |||||| || || ||| Sbjct 31519975 ACCATGATATCTGGCAGATGTACAAGAAAGCCGAGGCCTTCTTCTGGACAGCTGACGAGG 31519916 Query 42352 TTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGT---CTGA-GAACGAAAAGTTT 42407 | ||||| ||||||| | || ||| | ||| |||| || || | || Sbjct 31519915 TGGACCTCTCCAAGGATATTCAACACTAGGAAGCGCTGAAACCTGACGAGAGACATTTTA 31519856 Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 | |||| | | ||||| ||||| || ||| ||| |||||||||||||| |||||| Sbjct 31519855 TATCTCA----CGTCCTGGCTTTCTTTGCAGCCAGTGATGGCATAGTCAATGAAAACCTG 31519800 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCC 42525 | | || | |||| || ||| ||| ||||| ||||| ||||| ||||||| Sbjct 31519799 GTGGAGCGCTTTAGCCAAGAAGTTCAGGTTACA--GAGGCCCGCTGTTTCTATGGCTTCC 31519742 Query 42526 AGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAAC-ACGTACATC 42584 | || ||||| || ||| || ||||| ||||| | || |||| || |||| Sbjct 31519741 AAATTGCCATGGAAAACAAACATTCTGAAATGTAC---AGTCTCCTCATTGAC--ACATT 31519687 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 ||| || ||| | | || ||||| || || ||||| ||||| || | || Sbjct 31519686 AAAGATTCCAAAGAGAGGGAATATCTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAA 31519627 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAG 42703 ||| |||| |||||||| || ||||| ||| | | | | || | || || || Sbjct 31519626 AAGTAGGCTGACTGGGCCCTGCGTTGGATTTGGAGACAAAAAGACTACCTATGGAGAAAG 31519567 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 | || |||||| | || || || | |||||||||||| ||| | || || || || || Sbjct 31519566 AGTTGTGGCCTTTGCTGCTGTAGAAGACATCTTCTTCTCTGGCTCTTTTGCGTCAATATT 31519507 Query 42764 CTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||||||||| | ||| |||||| || || || || || || || || || ||||| Sbjct 31519506 CTGGCTCAAGAAACAGGGACTGATGCCTGGCCTTACATTTTCCAAAGAGCTTATTAGCAG 31519447 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA--C 42881 || ||| | | || | | |||||||||||| ||||| || ||||| || | | Sbjct 31519446 AGATGAGCGTTTACACTGTGGCTTTGCCTGCCTGATGTTC---AGGCACCT--GGTAAGC 31519392 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 ||||| | || | | || | | ||||| | | || ||| ||| || ||| | Sbjct 31519391 AAGCCGCCAGAGCAAAGAGTACAAGAAATCATTATCAACGCAGTGAGGATAAAGCAGGTG 31519332 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 || |||||| || | ||||| ||| || || | |||||| | ||||||| | Sbjct 31519331 TTTCTCACGGAGGCCCTGCCTGTGAAGCTCATCAGGATGAACTGCACCCTCATGAAGCGG 31519272 Query 43002 TACATCCAGTACGTCGCCGAC 43022 |||||| | | ||| |||||| Sbjct 31519271 TACATCGAATTCGTGGCCGAC 31519251 >seq42 Length=9663327 Score = 125 bits (138), Expect = 1e-23 Identities = 185/259 (71%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| | || || || || ||||||||||| ||| | || || || || |||||| Sbjct 3435652 GTGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGG 3435711 Query 42768 CTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | | || | | |||||| || || || || || ||||| || || ||||| || Sbjct 3435712 CTCAAG-AAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGA 3435770 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 ||||| | || | |||||||||||||| ||||| || ||||| |||||||| Sbjct 3435771 TGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTC---AGGCACCTGGTACACAAGCC 3435827 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 || || | | || | | ||||| | | ||| || ||| ||| ||||||| || Sbjct 3435828 GCCGGAGCAAAGAGTACAAGAAATCATTATCAACGCCTTGAGGATAGAGCAGGAGTTTCT 3435887 Query 42947 CACGCAGTCGCTGCCCGTG 42965 |||| || | ||||| ||| Sbjct 3435888 CACGGAGGCCCTGCCTGTG 3435906 >seq9 Length=86001432 Score = 118 bits (130), Expect = 2e-21 Identities = 243/359 (68%), Gaps = 7/359 (2%) Strand=Plus/Minus Query 42608 GCTGTTCAAGGCCATGGAGACGATGCCCTGCATC-AAGAAGAAGGCGGACTGGGCGCTCA 42666 ||| ||||| || || ||||| ||||| || | || |||||||| |||||||| || Sbjct 36370290 GCTCTTCAATGCTATTGAGACAATGCCTTGTGTGGAAAAAGAAGGCTGACTGGGCCCTGC 36370231 Query 42667 ACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 ||||| | | || || || | || || | | || |||||| | || | | Sbjct 36370230 GTTGGATTGGGGACAAAGAAGCTACCTATGGAGAACGAGTTGTGGCCTTTGCTGCTATGG 36370171 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGA 42786 | || ||||||| | ||| | || || || || |||||||||| | | || || Sbjct 36370170 AAGGGATCTTCT---CTGGCTCTTTTGCGTCAATATTCTGGCTCAGGAAACTGGGACTGA 36370114 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| || || || || || ||||| || || ||||| || ||||| | || | |||| Sbjct 36370113 TGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATGAGGGTTTACACTGTGACT 36370054 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGG 42906 |||||||||| ||||| || ||||| |||||||| || || | | || | | Sbjct 36370053 TTGCCTGCCTGATGTTC---AGGCACCTGGTACACAAGCCGCCGGAGCAAAGAGTACAAG 36369997 Query 42907 CCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 ||||||| | || ||| ||| ||| ||||||| |||||| || | ||||| ||| Sbjct 36369996 AAATCATCATCAACGCAGTGAGGATAGAGCAGGAGTTTCTCACGGAGGCCCTGCCTGTG 36369938 >seq61 Length=4506808 Score = 114 bits (126), Expect = 2e-20 Identities = 108/135 (80%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | ||||| || ||| | |||||||| || | || || Sbjct 586054 GGGGAGAGAGTGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCT 586113 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | ||||||||||| ||| ||| ||| || |||||||||||||| |||||||| ||||| Sbjct 586114 GCTATCTTCTGGCTGAAGAAGAGAGGCCTC-ATGCCCGGACTCACTTTCTCGAATGAACT 586172 Query 42815 CATCAGCAGGGACGA 42829 |||||||||||| || Sbjct 586173 CATCAGCAGGGATGA 586187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944264420139600