Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq26 228 7e-55 seq8 114 1e-20 seq13 93.3 4e-14 >seq26 Length=66536344 Score = 228 bits (252), Expect = 7e-55 Identities = 485/717 (68%), Gaps = 8/717 (1%) Strand=Plus/Plus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 || ||||| ||||| | ||| || || ||||||||||| ||||| | ||| ||||| Sbjct 25929519 AGGGGCTCGATATGATTCAGGTAAATATGTGCATCTCCCAAGGTGTGGACAAAATCCCCT 25929578 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || | || || || || |||| ||| || || | |||| ||||||||||||||| Sbjct 25929579 GGCTTTAGGCCTGTGGTGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTG 25929638 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || || || |||| ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 25929639 AAGGGCACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCA 25929698 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | |||||||| |||||||| | || || || || || ||||||| | | || Sbjct 25929699 TTCGCTACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCT 25929758 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 |||||||| |||||||| ||||||||||| || | || | |||| || || Sbjct 25929759 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGCTGGTTTTGATGGTGTCA 25929818 Query 20471 A-CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTA 20529 | || | | | || ||||| | || || || | || || | ||| || ||| Sbjct 25929819 ATCACTTTTTG-CAGCTGGTCTACTCCTTGACCCGAGTAATCTGATTCCATATCTTTGTA 25929877 Query 20530 CGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCT 20589 | || ||||| || |||||||||||||| ||||| || |||| |||||| ||| || Sbjct 25929878 GTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC- 25929936 Query 20590 GTGC-GCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA 20648 |||| | | || | | | |||| || || | ||| ||||| ||||| || | | Sbjct 25929937 GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCA 25929996 Query 20649 CTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTT 20708 ||||| | || || || | | | || ||||| | |||||| |||| || | Sbjct 25929997 CTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCT 25930056 Query 20709 GCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGAC 20768 || ||||| ||| ||||| || || || || || | ||||| | || | ||| Sbjct 25930057 CCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGT 25930116 Query 20769 TATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCGAT 20828 | || || |||||||||| || | || | |||||| |||| |||||||| || | Sbjct 25930117 TGTATCTCACCTGCATGCCGAACACCGACAAGGTGCCGGTGCCCGTGCGGTC--CTCCTT 25930174 Query 20829 C--GCTGCCACGGCACAAAATTTCCCTCAACTGCCTGAGATACTGAAGTTCCTCGTG 20883 | | || | || || ||| | | || ||||| |||||||| || ||| |||| Sbjct 25930175 CTTGAAACCGCAGCGCATAATGTGCTCCACCTGCCCCAGATACTGCAGCTCCCCGTG 25930231 >seq8 Length=88571779 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||| ||||||||||||||| || || || |||| ||| Sbjct 15942893 TGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 15942952 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || |||||||||||||| || ||||| ||||| ||||| || | |||||||| |||||| Sbjct 15942953 ATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCGCTACATAGAATTGA 15943012 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || || ||||||| Sbjct 15943013 CAGAGGGCATGGCAAGGAGGCAGTGCCATCA 15943043 Score = 93.3 bits (102), Expect = 4e-14 Identities = 195/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGC 20593 || ||||| || |||||||||||||| ||||| || |||| |||||| ||| || |||| Sbjct 15948558 GCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGC 15948616 Query 20594 -GCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 | | || | | | |||| || || | ||| ||||| ||||| || | ||||| Sbjct 15948617 AGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCC 15948676 Query 20653 TGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCAC 20712 | | || || || | | | || ||||| | |||||| |||| || | || Sbjct 15948677 TTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAA 15948736 Query 20713 TACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATA 20772 ||||| ||| ||||| || || || || || | ||||| | || | ||| | || Sbjct 15948737 AACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGTTGTA 15948796 Query 20773 CCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 || |||||||||| || | || | |||||| |||| |||||||| Sbjct 15948797 TCTCACCTGCATGCCGAACACCGACAAGGTGCCGGTGCCCGTGCGGTC 15948844 >seq13 Length=46045664 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||| ||||||||||||||| || || || |||| ||| Sbjct 164526 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 164467 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || |||| |||||||| || ||||| || || ||||| | | |||||||| ||||| Sbjct 164466 ATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTATTCGCTACATAGAATTGG 164407 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || || ||||||| Sbjct 164406 CAGAGGGCATGGCAAGGAGGCAGTGCCATCA 164376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441337848791400