Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 >seq5 Length=88288230 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||| | || ||||| || |||||||||||||||| || ||||||| || || | Sbjct 21499149 AGGGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGA 21499208 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| ||||| || ||||| | ||| ||| ||| || ||| | | || |||| || | Sbjct 21499209 TGCCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAGCTCCCTGGGAGAGA 21499268 Query 9981 ATCTAAAGACCCT 9993 | || |||||||| Sbjct 21499269 AGCTGAAGACCCT 21499281 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||| ||||||| |||||||||||| || || |||| || Sbjct 21501247 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 21501306 Query 10140 TAGAAGCATACATGACAATTAA 10161 |||||||||||||||| || || Sbjct 21501307 TAGAAGCATACATGACCATCAA 21501328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552673031738400