Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq33 134 3e-26 seq2 131 4e-25 seq38 125 2e-23 seq17 125 2e-23 seq7 104 6e-17 seq16 96.9 8e-15 >seq33 Length=41749222 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | ||||| ||| || |||||||| || ||||| | Sbjct 34672176 CCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 34672235 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || ||||||||||| | ||| ||| | || Sbjct 34672236 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 34672295 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 34672296 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 34672355 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || || || || || ||||| ||||| |||||||| Sbjct 34672356 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq2 Length=98408828 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | | ||| ||| || |||||||| || ||||| | Sbjct 61256679 CCACCACGAAGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 61256620 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || ||||||||||| | ||| ||| | || Sbjct 61256619 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 61256560 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 61256559 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 61256500 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| || || ||||| | ||| |||||||| Sbjct 61256499 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 >seq38 Length=14253900 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| || || | ||||| ||| || |||||||| || ||||| | Sbjct 298683 CCACCATGAAGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 298742 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||||||| | ||| ||| | || Sbjct 298743 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 298802 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 298803 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 298862 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||| || ||||| | || ||||| ||||| |||||||| Sbjct 298863 TCGAACGTGATGGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq17 Length=65020687 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | ||||| || || |||||||| || ||||| | Sbjct 35302158 CCACCACGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGAC 35302217 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || | ||||| | || || || || |||||||| | ||| ||| | || Sbjct 35302218 AAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 35302277 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA-TTCTAC 288425 |||||||| ||||||||||| || ||||| || |||||||||| || | || ||| || Sbjct 35302278 ATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTC-CGAGAGTTCAAC 35302336 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || || || || || ||||| ||||| |||||||| Sbjct 35302337 CTCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq7 Length=85103860 Score = 104 bits (114), Expect = 6e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||||| ||||| || || | | Sbjct 35411326 CCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAG 35411267 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || ||||| || | ||| Sbjct 35411266 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 35411207 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || |||||||||||||| || || || ||||| || || | || || | || || Sbjct 35411206 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 35411147 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 | || ||||| ||||| || ||||| ||||| | ||| || |||||| ||| Sbjct 35411146 TTCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCATGAAGATTTGCATTTTGT 35411095 >seq16 Length=69618829 Score = 96.9 bits (106), Expect = 8e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || |||| || ||| || |||||||| || ||||| | Sbjct 24326390 CCACCACGAAGTCTCAACACCAGATAAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 24326449 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || | ||||| || || || || ||||||||||| | ||| ||| | || Sbjct 24326450 AAAGTACGGCTATCTTCCAACTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 24326509 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAG 288409 |||||||| ||||||||||| || || || || |||||||||| Sbjct 24326510 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAG 24326552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179558650770130