Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq17 91.5 1e-13 seq38 89.7 5e-13 seq33 87.8 2e-12 seq7 84.2 2e-11 seq2 84.2 2e-11 seq73 82.4 8e-11 >seq4 Length=96435083 Score = 104 bits (114), Expect = 2e-17 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 52633 AGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATG 52691 |||||||| | |||| || ||||| || |||| | || |||||| |||| | ||| Sbjct 65464121 AGGAGTTTCTCACGGAGGCCCTGCCTGTGAAGCTCATCGGGATGAACTGCGCCCTG-ATG 65464063 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG--CAGCCAAAGT 52749 |||||||||| || |||||||| | || || || |||| ||| |||| | | | Sbjct 65464062 AAGCAGTACATCGAATTCGTGGCGGACAGGCTTATGCTGGAGCTAGGGTTCAGCAAGATT 65464003 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 ||||| | ||||| ||||| || ||| | || ||||| || || || ||||| | Sbjct 65464002 --TTCAAAGTAGAAAATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAA 65463945 Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 |||| || ||||||||||| ||||||||| || Sbjct 65463944 ACTTCTTTGAGAAGCGAGTGGGCGAGTATCAG 65463913 >seq17 Length=65020687 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || ||||| | | | ||||||||||| ||||||||||| || |||||| || Sbjct 35302172 CAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCATC 35302231 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| || || ||||| || ||||| || || Sbjct 35302232 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 35302291 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || ||| | | ||| | ||||| | || ||||||| ||| | || Sbjct 35302292 CTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATGGT 35302351 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || || ||||||||||| Sbjct 35302352 TTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq38 Length=14253900 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | ||||||||||| ||||||||||| || |||||| || || Sbjct 298701 ACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 298760 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 || || || || | | |||| || | ||| || || ||||| || ||||| || || | Sbjct 298761 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 298820 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || || | | ||| | ||||| | | || ||||||| ||| | ||||| Sbjct 298821 ATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATGGTTTTC 298880 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || || ||||| ||||||||||| Sbjct 298881 CCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq33 Length=41749222 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || ||||| | | | ||||||||||| ||||||||||| || |||||| || Sbjct 34672190 CAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 34672249 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | |||| || | ||| || || ||||| || ||||| || || Sbjct 34672250 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 34672309 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || || | | ||| | ||||| | | || ||||||| ||| | || Sbjct 34672310 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 34672369 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || || ||||||||||| Sbjct 34672370 TTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq7 Length=85103860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| || || || || || || ||||| || | | Sbjct 11188123 GACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCA 11188064 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| ||| || | Sbjct 11188063 AAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACA 11188004 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||| | || | || |||||||| | ||||| Sbjct 11188003 TTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTC 11187944 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 11187943 ACAAAGATCTGCAT 11187930 >seq2 Length=98408828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| || || || || || || ||||| || | | Sbjct 12204383 GACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCA 12204324 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || ||||| || ||||| ||| ||| || | Sbjct 12204323 AAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACA 12204264 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||| | || | || || |||||||| || || Sbjct 12204263 TTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 12204204 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 12204203 ACAAAGATCTGCAT 12204190 >seq73 Length=3316092 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| || || || | || |||||||||||||||||| ||||| || ||||| ||| Sbjct 2392952 TACTCTACTATTTCTGTACATAGGTTGCTGCATTTTATGGTGCCCAGGTTCTGCTGGTTG 2392893 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || || ||||| || | |||||| |||||||||| || ||| ||||| Sbjct 2392892 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTC 2392843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496223102221200