Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq33 98.7 7e-16 seq17 98.7 7e-16 seq38 89.7 4e-13 seq2 89.7 4e-13 >seq33 Length=41749222 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || ||||||||||| || || ||||| |||||||| || Sbjct 34672176 CCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 34672235 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || ||||||||| | |||| | ||| || || ||| Sbjct 34672236 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 34672295 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| || ||| |||||||||| || ||| || Sbjct 34672296 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 34672355 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || || || || || || ||||| ||||| Sbjct 34672356 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq17 Length=65020687 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || ||||||||| | || || ||||| |||||||| || Sbjct 35302158 CCACCACGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGAC 35302217 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || |||||||| | |||| | ||| || || ||| Sbjct 35302218 AAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 35302277 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||| ||| |||||||||| || ||| || Sbjct 35302278 ATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACC 35302337 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| ||||| || || || || ||||| ||||| Sbjct 35302338 TCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq38 Length=14253900 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| | || ||||||||||| || || ||||| |||||||| || Sbjct 298683 CCACCATGAAGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 298742 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || |||||||| | |||| | ||| || || ||| Sbjct 298743 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 298802 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| || ||| |||||||||| || ||| || Sbjct 298803 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 298862 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| || | || || ||||| ||||| ||||| Sbjct 298863 TCGAACGTGATGGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq2 Length=98408828 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || ||| ||||||| || || ||||| |||||||| || Sbjct 61256679 CCACCACGAAGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 61256620 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || ||||||||| | |||| | ||| || || ||| Sbjct 61256619 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 61256560 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| || ||| |||||||||| || ||| || Sbjct 61256559 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 61256500 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || || || || || | ||||| ||||| Sbjct 61256499 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357364406545475