Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq33 118 1e-21 seq2 113 4e-20 seq7 109 5e-19 seq38 104 2e-17 seq17 104 2e-17 seq9 100 3e-16 seq4 84.2 2e-11 >seq33 Length=41749222 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||||||||| | || ||||| ||||| || ||||| || Sbjct 34672173 GCACCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA 34672232 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || |||||| |||||| | ||||||||| ||| Sbjct 34672233 GACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGA 34672292 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||||| | ||| | ||||||| || Sbjct 34672293 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCA 34672352 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||||| || || || || || || ||||||||||| Sbjct 34672353 ACCTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq2 Length=98408828 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| || ||||| ||| || |||||||| || Sbjct 12204386 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCT 12204327 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || || |||||||||||| ||| || |||| Sbjct 12204326 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCTTG 12204267 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 12204266 ACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 12204207 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 12204206 TTCACAAAGATCTGCAT 12204190 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||||||| | | || ||||| ||||| || ||||| || Sbjct 61256682 GCACCACCACGAAGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA 61256623 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || |||||| |||||| | ||||||||| ||| Sbjct 61256622 GACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGA 61256563 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||||| | ||| | ||||||| || Sbjct 61256562 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCA 61256503 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||||| || || || || || | ||||||||||| Sbjct 61256502 ACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 >seq7 Length=85103860 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| ||| || |||| | Sbjct 11188372 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAGCCA 11188313 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||| ||| || || |||||| | |||||| || || || |||||||||||| Sbjct 11188312 TCTTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 11188253 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | |||||| |||| ||| | Sbjct 11188252 TCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 11188193 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || ||||| |||||||| Sbjct 11188192 GTCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 >seq38 Length=14253900 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || || ||||||||| | || ||||| ||||| || ||||| || Sbjct 298680 GCACCACCATGAAGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA 298739 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| |||||| | ||||||||| ||| Sbjct 298740 GACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 298799 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||||| | ||| | ||||||| || Sbjct 298800 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCA 298859 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||||| || | || || ||||| ||||||||||| Sbjct 298860 ACCTCGAACGTGATGGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq17 Length=65020687 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||||||||| | | ||||| ||||| || ||||| || Sbjct 35302155 GCACCACCACGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCA 35302214 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| |||||| | ||||||||| ||| Sbjct 35302215 GACAAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 35302274 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || |||| | ||| | ||||||| || Sbjct 35302275 GGAATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCA 35302334 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||||| || || || || || || ||||||||||| Sbjct 35302335 ACCTCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq9 Length=86001432 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||||||||| | || ||||| ||||| || ||||| || Sbjct 39797620 GCACCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA 39797561 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| |||||| | ||||||||| ||| Sbjct 39797560 GACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 39797501 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| || ||| || ||||| | ||| | ||||||| || Sbjct 39797500 GGAATTCCTTCCTTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCA 39797441 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| | | ||||| || | || || || || ||||||||||| Sbjct 39797440 ACCTCGAGCGGGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq4 Length=96435083 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 47375 GGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAATGAACGCGGAGATGATG 47432 ||||||| || | ||||| ||||| | || || | || |||||| | ||||| Sbjct 65464120 GGAGTTTCTCACGGAGGCCCTGCCTGTGAAGCTCA--TCGGGATGAACTGCGCCCTGATG 65464063 Query 47433 AGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATT 47492 | ||||||||||||| || || ||| | || | | ||||| || ||||||| Sbjct 65464062 AAGCAGTACATCGAATTCGTGGCGGACAGGCTTATGCTGGAGCTAGGGTTCAGCAAGATT 65464003 Query 47493 TACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAAC 47552 | | | || |||||||| || || ||| | || ||||| || || || ||||| ||| Sbjct 65464002 TTCAAAGTAGAAAATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAAAC 65463943 Query 47553 TTTTTCGAGAAGCGCGTCGGCGAATAT 47579 || || |||||||| || ||||| ||| Sbjct 65463942 TTCTTTGAGAAGCGAGTGGGCGAGTAT 65463916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475463146280400