Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq33 82.4 7e-11 >seq33 Length=41749222 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||||||| | ||| || || || ||||||||||| || || || Sbjct 34672176 CCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 34672235 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||| || || || ||| | |||| | ||||| || || ||| Sbjct 34672236 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 34672295 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| ||||| || || || |||| ||||| ||||| || | || || Sbjct 34672296 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 34672355 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||||| || || || || || || ||||| |||||| Sbjct 34672356 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCATC 34672403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451967406996600