Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5 176 7e-39 seq3 114 2e-20 >seq5 Length=88288230 Score = 176 bits (194), Expect = 7e-39 Identities = 210/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| ||| ||||| |||||||||| || || || | || Sbjct 40225213 AAGGGACAACCCTTCACATTATTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 40225154 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || ||||||||| ||| || |||||| Sbjct 40225153 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGCGGAGAACAGATGGGA 40225094 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 40225093 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 40225034 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | | | ||| || || || | || |||| | Sbjct 40225033 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 40224974 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||||||||||||||| ||||| || |||||||| ||| Sbjct 40224973 TCACTGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCT 40224929 Score = 154 bits (170), Expect = 2e-32 Identities = 211/293 (72%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || |||||||| ||||| || ||||| || |||| | |||||||| |||||| Sbjct 40224158 CCGGCCAGCGATCTGTCTGGTGAATGACTCAACAAAGTGGGTGAGTCCGTGCTCGATGAG 40224099 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| || ||||| | ||| || | ||| |||| | ||| | ||| | || Sbjct 40224098 GATGGAGTTATTGTAGAGGAACTGCTTGTAGTTGTACTCCTGGTCTTCGATGTGGAAGCT 40224039 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| | ||||| || ||||| ||||| || || |||||||| Sbjct 40224038 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCGGCTGCGATGCGGTTCTG 40223979 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||| ||||| || | || | ||||||||| Sbjct 40223978 ATACTGGAACTGCTGGT--TGAATAGCAGCTCTGGGTCGAACTTGAGTTTGAAGTGGTAT 40223921 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || || ||||| ||||| | | ||| | ||| || || || ||||| || Sbjct 40223920 CCACTCAGGTGCTGCACATAGTCTTCGATCACAATCTTGATAGTCTCCCCTGT 40223868 Score = 140 bits (154), Expect = 5e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 9761 CCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATA 9820 |||| || || || || |||||||| ||||| || || |||||||| || | || ||| | Sbjct 40223654 CCCACTCAGGATGCTCCTGTTTGAGCACATCACACACTCTGTTGTGCTCCCGCAACCAGA 40223595 Query 9821 TGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGC 9880 ||||||| |||||||| | ||| ||||||| |||||| || || | |||||||||||| Sbjct 40223594 TGGTGGCATACATCATCAGACCAGGCACTAGACCAAAGACCTCCTGCCCCACTGCAAACT 40223535 Query 9881 GCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGG 9940 | |||| || || | || | || | ||| | |||||||| |||||||| |||| Sbjct 40223534 GTAGATGCTCAGGGGTGTGAGGGGGGTAGATCATCTCTACCTGGGTGTCTTTGACCGTGG 40223475 Query 9941 GGGGATACATTTCACCGTCAATAACCT 9967 | ||||||| || || |||| |||| Sbjct 40223474 GAGGATACACCTCTCCACCAATGACCT 40223448 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | ||||||||| | ||| ||| | || Sbjct 40222326 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 40222267 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || |||||||||| || | ||| || ||||| Sbjct 40222266 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCGAACATCATATTCGAGCCTTGAGGATC 40222207 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | |||| | || ||||||||||| || | | |||| || || || Sbjct 40222206 AGGGATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAACTTCTTTTGAGTCAGGAAG 40222150 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10388 CACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTAT 10447 |||||||||| || | ||||| |||||||| | || ||||| || | ||| || | Sbjct 40221601 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 40221542 Query 10448 AATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCG 10507 | ||||| || || || || ||||||||| | ||||| ||||| | | |||||| | Sbjct 40221541 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCATGTTGTAAGTTG 40221482 Query 10508 GGGGACTGTCAATCATCTCGGACCTGGCT 10536 | ||||||||||||| | || |||||| Sbjct 40221481 GCGGACTGTCAATCAAATGTGATCTGGCT 40221453 >seq3 Length=92994323 Score = 114 bits (126), Expect = 2e-20 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || || || || || || ||||| |||||||| ||||| ||| | Sbjct 40183792 GCTGTGTTGACAAGGTTGAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCT 40183851 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || || ||| ||| | | ||| || || | |||||| |||||||| | ||| || Sbjct 40183852 GGAGAACAAATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATC 40183911 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 |||||||| || ||||||| ||| | ||||| | | || || | ||||| Sbjct 40183912 ATGCTCTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCCAGAAGCAACCCCGGGTAGAAC 40183971 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | || |||| ||| ||||| || | |||||||| || || ||||||||||| ||| Sbjct 40183972 TCTAAGGCATCGATGTCACCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 40184031 Query 9176 ACA 9178 || Sbjct 40184032 GCA 40184034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723670689789000