Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq73 114 2e-20 >seq73 Length=3316092 Score = 114 bits (126), Expect = 2e-20 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | |||||| | ||||||| |||||| || || |||| Sbjct 2400527 CCTGCTTCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGT 2400468 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| | |||||||||||| || ||||||| |||| | || |||||||| |||| | Sbjct 2400467 GGATGTTTAAAGACTGGCTTTGATCAATGAAAG-CGCCTCTCTCGGCGGCCATCTTGAGA 2400409 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | |||||||| || ||||||||||||||||| Sbjct 2400408 ACAGTCTTCTGAGAGATCTCCCACACCGTCTT 2400377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795092233647600