Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq33 154 3e-32 seq38 149 1e-30 seq2 145 2e-29 seq9 136 9e-27 seq17 127 5e-24 seq7 127 5e-24 seq16 116 9e-21 seq23 98.7 2e-15 seq26 84.2 5e-11 >seq33 Length=41749222 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | || || || ||||||||||||| ||||||||||| |||||| Sbjct 34672182 CGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 34672241 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || |||||||| || | |||||| || ||| ||||||| Sbjct 34672242 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCT 34672301 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||| | | ||| || || | | Sbjct 34672302 TCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 34672361 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || ||||| ||||| || Sbjct 34672362 GTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTG 34672399 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||| |||||||||| | |||||| | || |||||| |||| Sbjct 34672276 CTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATCCAA 34672217 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || ||||| | || ||||||||||| Sbjct 34672216 AAGGAGTCCACCCTTCATTTGGTGTTGAGACTTCG 34672182 >seq38 Length=14253900 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||||||||| || | || || || ||||||||||||| ||||||||||| |||||| | Sbjct 298690 GAAGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTAC 298749 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||||||||||||||| || || ||||| || | |||||| || ||| |||||||| Sbjct 298750 GGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTT 298809 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||| || ||| | ||||| | | ||| || || |||| Sbjct 298810 CCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACG 298869 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || ||| | || || || || ||||| || Sbjct 298870 TGATGGTTTTCCCCTTAAGGGTCTTTACGAAAATCTG 298906 >seq2 Length=98408828 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | | || || ||||||||||||| ||||||||||| |||||| Sbjct 61256673 CGAAGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 61256614 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || |||||||| || | |||||| || ||| ||||||| Sbjct 61256613 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCT 61256554 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||| | | ||| || || | | Sbjct 61256553 TCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 61256494 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || |||| ||||| || Sbjct 61256493 GTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTG 61256456 Score = 104 bits (114), Expect = 6e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 || || ||||| || |||| ||||||||| | || || | |||||||||||||| || Sbjct 12204389 AGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTG 12204330 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || ||||| || | ||||||||| || || || || ||||| |||||| | Sbjct 12204329 CCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCC 12204270 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || || |||| |||||| | | || || |||| ||||| ||||| || || || Sbjct 12204269 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGG 12204210 Query 199610 GTTTTCACAAAAATTTG 199626 || |||||||| || || Sbjct 12204209 GTCTTCACAAAGATCTG 12204193 >seq9 Length=86001432 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | || || || ||||||||||||| ||||||||||| |||||| Sbjct 39797611 CGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 39797552 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || ||||| || | |||||| || ||| ||||||| Sbjct 39797551 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCT 39797492 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||| ||||| ||| || ||| | ||||| | | ||| || || | | Sbjct 39797491 TCCTTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 39797432 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||| || || ||| | || || ||||| ||||| || Sbjct 39797431 GGGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTG 39797394 >seq17 Length=65020687 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | || || | ||||||||||||| ||||||||||| |||||| Sbjct 35302164 CGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 35302223 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||| || || ||||| || | |||||| || ||| ||||||| Sbjct 35302224 CGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCT 35302283 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| || || ||| | ||||| | ||| || || | | Sbjct 35302284 TCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGC 35302343 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || ||||| ||||| || Sbjct 35302344 GTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTG 35302381 >seq7 Length=85103860 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||| | || || | ||||| Sbjct 11188142 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 11188083 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || ||||| || | ||||||||| || || ||||| || Sbjct 11188082 TTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 11188023 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 11188022 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 11187963 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | ||||||||||| || || Sbjct 11187962 CTTACCAGTTAAGGTTTTCACAAAGATCTG 11187933 Score = 113 bits (124), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| |||||| | | | ||| | |||||| Sbjct 35411311 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCATCT 35411252 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| ||||||||||| || || || ||| ||| Sbjct 35411251 TCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 35411192 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || | || ||||| ||| Sbjct 35411191 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTC 35411132 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || |||| || ||||| |||||| Sbjct 35411131 TTGCCAGTCAGGGTCTTCATGAAGATTTG---CATTTT 35411097 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||| | || || | ||||| Sbjct 11188370 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAGCCATC 11188311 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||| || || || ||||| || | ||||||||| || || || || || Sbjct 11188310 TTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 11188251 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| ||| || |||| |||||| | | || || || | ||||| || Sbjct 11188250 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 11188191 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || | || || |||||||| || || Sbjct 11188190 CTTGCCTATCAGGGTCTTCACAAAGATCTG 11188161 >seq16 Length=69618829 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || | || || ||||||||||||| ||||||||||| |||||| Sbjct 24326396 CGAAGTCTCAACACCAGATAAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 24326455 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | | |||||||| |||||| || |||||||| || | |||||| || ||| ||||||| Sbjct 24326456 CGGCTATCTTCCAACTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCT 24326515 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 24326516 TCCTTATCCTGGATCTT 24326532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || ||||||||||||||| | | |||||| | || |||||| |||| Sbjct 24326490 CTGATCTTCGCTGGCAAGCAGTTGGAAGATAGCCGTACTTTGTCTGACTACAACATCCAA 24326431 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || ||| | || || ||||||||||| Sbjct 24326430 AAGGAGTCCACCCTTTATCTGGTGTTGAGACTTCG 24326396 >seq23 Length=58015819 Score = 98.7 bits (108), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||||| |||||| | ||||||||||||||||| || ||||||| Sbjct 5553188 CCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGA 5553247 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||| || ||| ||||||| Sbjct 5553248 TCAGCCTCTGCTGATCAGGAGGAATTCCT 5553276 >seq26 Length=66536344 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| | ||| || || || ||||||||||| | ||||||||||| |||||| Sbjct 52781165 GAAGTCTCAACATAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTAT 52781106 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 || |||||||||||| || ||||||| || | || | | || ||| |||||||| Sbjct 52781105 GGCCGTCTTCCAGCTGC---CCAACGAAGATCAGCCTCTACCGATCAGGAGGAATTCCTT 52781049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178825910249445