Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq73 86.0 7e-12 seq42 82.4 9e-11 seq4 82.4 9e-11 >seq73 Length=3316092 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| ||||||||||| | |||| | || || || || Sbjct 2392968 CTCATCTTTGCTGGTATACTCTACTATTTCTGTACATAGGTTGCTGCATTTTATGGTGCC 2392909 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| || || | ||| |||||||||||||| || || || Sbjct 2392908 CAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCC 2392849 Query 106612 CGTCTCCGTCTGTGACT 106628 |||||| ||||| |||| Sbjct 2392848 CGTCTCTGTCTGAGACT 2392832 >seq42 Length=9663327 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||||||||||||||||||| |||||||| || || ||| |||||||| Sbjct 3438578 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCAT 3438519 Query 117045 AAAGTCAAATGGATT 117059 |||||||| ||||| Sbjct 3438518 GAAGTCAAACGGATT 3438504 >seq4 Length=96435083 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||||||||||||||||||| ||||| || || || ||| |||||||| Sbjct 65463916 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCAT 65463975 Query 117045 AAAGTCAAATGGATT 117059 |||||||||||||| Sbjct 65463976 GAAGTCAAATGGATT 65463990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589934080895400