Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq119 111 1e-19 seq24 96.9 3e-15 seq1019 95.1 1e-14 seq257 93.3 3e-14 >seq119 Length=1620852 Score = 111 bits (122), Expect = 1e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 954227 CCTCATGGTGCACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 954286 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||||| |||||||| |||||| || ||| | | || Sbjct 954287 CCCACTTCTGGAAGGTTCCATCTCCAGAAGGTCTGGTCTCCACCAGCTCCATATCCTGAG 954346 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| | | ||| ||||| |||||||||||| | || Sbjct 954347 TCTGTTCCTCCTCCTCCC-TCTGCCAGCTCAGGGTGATGTCAGCAGGATAGAAGTCCATG 954405 Query 528 GCCCAACA 535 ||||| || Sbjct 954406 GCCCAGCA 954413 Score = 109 bits (120), Expect = 4e-19 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 343313 CCTCATGGTACACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 343254 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| || ||| || ||| | | || Sbjct 343253 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCTACCAGCTCCAAGTCCTGAG 343194 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| |||| ||| | ||| ||||| |||||||| || Sbjct 343193 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTTAGGGTGAAGTCAGCAGGGTAGAAGCCCATG 343135 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGT 587 ||||| || | || || || | || | |||| | || ||||||||| ||| | Sbjct 343134 GCCCAGCACCTCAGGGTAACATCACCTTTAGGTCCAGGATGATGGGTCACGTGTGCCTTT 343075 Query 588 GG 589 || Sbjct 343074 GG 343073 Score = 109 bits (120), Expect = 4e-19 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || |||||||| ||||| | | ||| || | | | || Sbjct 361635 CCTCATGGTACACATGGCATGTATATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 361694 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| | |||||||| |||| |||||||| |||||| || ||| | | || Sbjct 361695 CCCACTTCTGGCAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 361754 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| || | ||| ||||| ||||| |||||||| | Sbjct 361755 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGG 361813 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGT 587 ||||| || | || || || | || | |||| | || ||||||||| ||| | Sbjct 361814 GCCCAGCACCTCAGGGTGACATCACCTTTAGGTCCAGGATGATGGGTCACGTGTGCCTTT 361873 Query 588 GG 589 || Sbjct 361874 GG 361875 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | |||||| | | | || Sbjct 375426 CCTCATGGTACACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGTACCACCAGAGATG 375367 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| || ||| | | || Sbjct 375366 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 375307 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| || | ||| ||||| || || |||||||| | Sbjct 375306 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGATGTCAGCCGGGTAGAAGCCCAGG 375248 Query 528 GCCCAACA 535 ||||| || Sbjct 375247 GCCCAGCA 375240 Score = 105 bits (116), Expect = 5e-18 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | ||||||| Sbjct 359096 CCTCATGGTACACATGGCATGTGTATTTGTGCTCCTCTCCAGAAGGCACCACCATGGCTG 359155 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | |||||||| |||||| || ||| | | | Sbjct 359156 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGTCTGGTCTCCACCAGCTCCATATCCTGTG 359215 Query 469 TCAGTTGCTCTGC--TCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGT 526 || ||| || ||| || | | ||||| || || | ||| || |||||||||||||| Sbjct 359216 TCTGTTCCT-TGCCATCTC-TCTGCCAGGTCATAGCAATATCAGCAGGATAGAAGCCCAG 359273 Query 527 GGCCCAACATTTTAGTGTTAC 547 |||||| ||| | || || || Sbjct 359274 GGCCCAGCATCTCAGGGTGAC 359294 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 929138 CCTCATGGTACACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 929197 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||||| |||||||| |||||| || ||| | | || Sbjct 929198 CCCACTTCTGGAAGGTTCCATCTCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 929257 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || ||| |||| | || | ||||| | | ||| ||| ||||| |||||||| || Sbjct 929258 TCTGTTCCTCTTCCTCCCTCTGCCAGATCAGGGTGATGGAGGCAGGGTAGAAGCCCAGGG 929317 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGT 560 |||| || |||| || || | || | |||| Sbjct 929318 CCCAGCACCTTAGGGTGACATCACCTTTAGGT 929349 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 766 GCTTCATCTGTCGCTTCTAATTTCCTTTTAGAAATTTGAGAGGACATGTCTCTAGCGGTC 825 || || ||||| | ||| | || | | ||| || ||||||| | ||| | |||||| Sbjct 362508 GCCTCGTCTGTGTCCTCTGACTTGCGCTGAGAGATCTGAGAGGCCGCGTCAGTTGCGGTC 362567 Query 826 CAGGTCCTGAGATCTTCATTCAAAGAAATGTAGTCCCTGCCATCATAGGCCTGTTGACAG 885 |||| | || || | |||| ||||| || |||| |||||||||||||| |||||| Sbjct 362568 CAGGAGCACAGGTCCCCGTTCAGGGAAATATAATCCCGGCCATCATAGGCCTCCTGACAG 362627 Query 886 TAGCCTCGAAGGAGGGTTCCATCCGGCCCCACAACACAGCCGGACATCCATTGGAGGGTA 945 || || || || ||| |||||| || ||| ||||||| ||||||| || || || Sbjct 362628 TACCCACGGAGCAGGCGTCCATCTGGATCCAGGTCACAGCCATACATCCACTGCAGAGTG 362687 Query 946 TGTGGTTCT 954 || |||||| Sbjct 362688 TGAGGTTCT 362696 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 289449 CCTCATGGTGCACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGAACCACCAGAGATG 289390 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| || ||| | | || Sbjct 289389 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 289330 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| || | ||| ||| | ||| |||||||| | Sbjct 289329 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGATGAAGGAAGGGTAGAAGCCCAGG 289271 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGT 560 ||||| ||| | || || || | || | |||| Sbjct 289270 GCCCAGCATCTCAGGGTGACATCACCTTTAGGT 289238 Score = 98.7 bits (108), Expect = 8e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 922021 CCTCATGGTACACATGGCATGTGTATTTGTGCTCCTCTCCAGAAGGCACCACCAGAGATG 922080 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||||| |||||||| |||||| || | | | || Sbjct 922081 CCCACTTCTGGAAGGTTCCATCTCCAGAAGGTCTGGTCTCCACCAGCTCTGTGTCCTGAG 922140 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| | | ||| ||| |||||||||||||| || Sbjct 922141 TCTGTTCCTCCTCCTCCC-TCTGCCAGATCAGGGTGATGGAGGCAGGATAGAAGCCCATG 922199 Query 528 GCCCAACA 535 ||||| || Sbjct 922200 GCCCAGCA 922207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||| | || || ||||| ||||| | | ||| || | | | || Sbjct 274693 CCTCATGGTACACACGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 274634 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| || ||| | | || Sbjct 274633 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 274574 Query 469 TCAGTTGCTC-TGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| ||| | ||||| | | ||| | | | | ||| |||||||||||||| || Sbjct 274573 TCTGTTCCTCCTCCTCCC-TCTTCCAGATCAGGCTGATGGAGGCAGGATAGAAGCCCATG 274515 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGT 587 ||||| ||| | || || || | || | |||| | || |||||| || ||| | Sbjct 274514 GCCCAGCATCTCAGGGTGACATCACCTTTAGGTCCAGGATGATGGGTCACATGTGCCTTT 274455 Query 588 GGAG 591 |||| Sbjct 274454 GGAG 274451 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 328094 CCTCATGGTGCACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGAACCACCAGAGATG 328035 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||||| |||||||| |||||| || | | | || Sbjct 328034 CCCACTTCTGGAAGGTTCCATCTCCAGAAGGTCTGGTCTCCACCAGCTCTGTGTCCTGAG 327975 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 || ||| || || ||||| | ||||| || | ||| | ||| ||||| |||||||| Sbjct 327974 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGAGGTCAGCAGGGTAGAAGCC 327920 Score = 89.7 bits (98), Expect = 4e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||| ||| | ||||| || || ||||| ||||| | | ||| || | | |||| Sbjct 975830 CCTTATGGTACACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGCTG 975889 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| || ||| | | || Sbjct 975890 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 975949 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| || | | |||| ||||| ||||| || | Sbjct 975950 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGTCGATGTTAGCAGGGTAGAAACCCAGG 976008 Query 528 GCCCAACA 535 ||||| || Sbjct 976009 GCCCAGCA 976016 >seq24 Length=54861783 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||| | || || ||||| ||||| | | ||| || | | | || Sbjct 53513519 CCTCATGGTGCACACGGCATGTGTATTTGTGCTCCTCTCCAGAAGGCACCACCAGAGATG 53513578 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| || | | | | || Sbjct 53513579 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCTATGTCCTGAG 53513638 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| | || ||||| | ||||| || | | | ||| | |||||||||||||| || Sbjct 53513639 TCTGTTCTTCCTCCTCCC-TCTGCCAGGTCAGGCTGATGGCAGCAGGATAGAAGCCCATG 53513697 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGT 587 ||||| || | || || || | || | |||| | || ||||||||| ||| | Sbjct 53513698 GCCCAGCACCTCAGGGTGACATCACCTTTAGGTCCAGGATGATGGGTCACGTGTGCCTTT 53513757 Query 588 GG 589 || Sbjct 53513758 GG 53513759 >seq1019 Length=7683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||| | || || ||||| ||||| | | ||| || | | | || Sbjct 3097 CCTCATGGTACACACGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 3038 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| || ||| | | || Sbjct 3037 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 2978 Query 469 TCAGTTGCTC-TGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| ||| | ||||| | | ||| | | | | ||| |||||||||||||| || Sbjct 2977 TCTGTTCCTCCTCCTCCC-TCTTCCAGATCAGGCTGATGGAGGCAGGATAGAAGCCCATG 2919 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGT 587 ||||| ||| | || || || | || | |||| | || |||||| || ||| | Sbjct 2918 GCCCAGCATCTCAGGGTGACATCACCTTTAGGTCCAGGATGATGGGTCACATGTGCCTTT 2859 Query 588 GGAG 591 |||| Sbjct 2858 GGAG 2855 >seq257 Length=108604 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| ||||| || || ||| | ||||||| || ||| || | | |||| Sbjct 26910 CCTCATGCAGCACATGGCATGTGTATCTCTGCTCTTCTCCTGAAGGCACCACCACAGCTG 26969 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || |||||||| || | | |||| | | | Sbjct 26970 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCAATAAGTCCCATGTCCTGCG 27029 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| ||||| |||||||| || Sbjct 27030 TCAGGTCCTCCTCATCCCTCTGCCAGGTCAGGGTGATGTCTGCAGGGTAGAAGCCCAGGG 27089 Query 529 CCCAACATTTTAGTGT 544 |||| || || || || Sbjct 27090 CCCAGCACTTCAGGGT 27105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397716490808760