Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7 140 7e-28 seq40 113 1e-19 seq2 113 1e-19 >seq7 Length=85103860 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||||| ||||| | |||||||| Sbjct 35411308 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCATCTTCC 35411249 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 35411248 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 35411189 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| ||||| | ||||| | ||| Sbjct 35411188 ATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTTCAGGGTGATGGTC 35411132 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || | ||| | |||||||| Sbjct 35411131 TTGCCAGTCAGGGTCTTCATGAAGATTTGCATTT 35411098 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||||||||| || || ||||| |||| || || Sbjct 11188150 CTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTG 11188091 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||||| || ||||| ||||| || | || ||||| || || |||||| Sbjct 11188090 CGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCT 11188031 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || ||| |||||| ||||| |||||||| ||| || || || Sbjct 11188030 TCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCC 11187974 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| || || || ||||| || || | |||||| Sbjct 11187973 AGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCATT 11187929 Score = 122 bits (134), Expect = 2e-22 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||||||||| || || ||||| |||| || || Sbjct 11188378 CTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTG 11188319 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||| || ||||| ||||| || | || ||||| || || ||||| Sbjct 11188318 CAGCCATCTTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCC 11188259 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || ||| |||||| ||||| |||||||| ||| || || || Sbjct 11188258 TCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCG 11188202 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| ||| ||| || || || || | ||||| Sbjct 11188201 AGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 Score = 93.3 bits (102), Expect = 9e-14 Identities = 106/141 (75%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| ||||| || ||||| || || ||||| |||||||| || || || |||| Sbjct 36033220 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTG 36033279 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 |||||||| |||||||| ||| ||||| || ||||| | ||||| || |||| Sbjct 36033280 ACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGG 36033336 Query 195121 GTTTTTACGAACACTTGCATT 195141 || || ||||| | ||||||| Sbjct 36033337 GTCTTCACGAAGATTTGCATT 36033357 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/147 (73%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| ||||| |||| ||| | |||||| |||||||| Sbjct 62278757 ACCAGGTGCAGGGTTGACTCTTTCTGAATGTTGTCATCAGAAAGAGTGTGACCATCTTCC 62278698 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTT----GGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||||| ||||||||||| |||| || | || || ||| ||||| ||||| | Sbjct 62278697 AGCTGCTTGCCTGCGAAGATGAGTCTCTGCTAGGGGGAGTGAAGG-ATGCCCTCTTTATG 62278639 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAAT 195074 || || || ||| || ||||| || Sbjct 62278638 CTGGATCTTAACCTTCACATTCTCCAT 62278612 >seq40 Length=10521589 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| | |||||||||||| || || ||||| |||| | || | ||||| || ||| Sbjct 9790141 AGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAGC 9790082 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 | ||| || || || || || | || ||||| || || |||||||| |||||||| || Sbjct 9790081 TACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGATC 9790022 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||| ||||| |||||||| ||| || || ||||| || | ||||| Sbjct 9790021 TTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTG 9789965 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 9789964 CCTGTCAGGGTCTTCACAAAGATCTGCAT 9789936 >seq2 Length=98408828 Score = 113 bits (124), Expect = 1e-19 Identities = 148/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTA 195000 || ||||||||||| || || ||||| |||| || || | |||||||| ||||| || Sbjct 12204389 AGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTG 12204330 Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 ||||| ||||| || | || ||||| || || || || || ||||| || || ||| | Sbjct 12204329 CCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCC 12204270 Query 195061 TTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| ||||| |||||||| ||| || || || ||||| | ||||| || ||| Sbjct 12204269 TTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTC 12204213 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | || || || || | |||||| Sbjct 12204212 AGGGTCTTCACAAAGATCTGCATT 12204189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109391546498945