Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 118 7e-22 seq7 111 1e-19 seq40 102 5e-17 seq33 91.5 1e-13 seq17 91.5 1e-13 >seq2 Length=98408828 Score = 118 bits (130), Expect = 7e-22 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| ||||||||||| || ||||| Sbjct 12204380 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 12204321 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 12204320 ATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCTTGAC--AT 12204263 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 12204262 TCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 12204203 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 12204202 CAAAGATCTGCAT 12204190 >seq7 Length=85103860 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 11188384 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 11188325 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | |||| ||||||| ||| || ||||| || || | |||||||| | || Sbjct 11188324 AGGGTGCAGCCATCTTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11188265 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 11188264 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGA 11188207 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || | || |||||||||||||||||||| Sbjct 11188206 CCTCGAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 Score = 105 bits (116), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 11188156 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 11188097 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| || ||||| || || | |||||||| | || Sbjct 11188096 AGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11188037 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 11188036 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGA 11187979 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | || ||||||||||||||||| Sbjct 11187978 CCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 11187930 >seq40 Length=10521589 Score = 102 bits (112), Expect = 5e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | | | |||| ||||||| || ||||||||| Sbjct 9790126 TCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAGCTACTTGCCGGCAAAT 9790067 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || ||||| | || | || |||||||| ||||| ||||| || Sbjct 9790066 ATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--AT 9790009 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | || ||||| || || || || ||||||| Sbjct 9790008 TCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCA 9789949 Query 34969 CAAAGATCTGCATATTCGT 34987 ||||||||||||| || || Sbjct 9789948 CAAAGATCTGCATGTTGGT 9789930 >seq33 Length=41749222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| ||||| |||| ||| || || || ||||| ||||| || | | || || Sbjct 34672188 CTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCA 34672247 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| || || || || || || | ||||| || | || | || ||||| Sbjct 34672248 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 34672307 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| ||||| | |||| | || || ||||| |||| || ||| Sbjct 34672308 TCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 34672367 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||||||||| || |||||||| || |||||||| Sbjct 34672368 GTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq17 Length=65020687 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| ||||| |||| || || || || ||||| ||||| || | | || ||| Sbjct 35302170 CTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCA 35302229 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| || || ||||| || || | ||||| || | || | || ||||| Sbjct 35302230 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 35302289 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| |||||| | |||| | || | ||||| |||| || ||| Sbjct 35302290 TCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATG 35302349 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || || |||||||| || |||||||| Sbjct 35302350 GTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324608535749880