Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 394 1e-104 seq26 347 1e-90 seq9 242 4e-59 seq87 233 2e-56 seq42 196 5e-45 seq73 93.3 5e-14 >seq4 Length=96435083 Score = 394 bits (436), Expect = 1e-104 Identities = 647/926 (70%), Gaps = 10/926 (1%) Strand=Plus/Plus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCATTTTT 18672 || ||| ||||||| | |||||||||||| | ||||| ||| || ||||| | Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCT---GAATTTGACATCACCCCCATCCTC 65463913 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| ||| | |||| || |||||||| || || ||||| |||| ||| ||| |||| Sbjct 65463914 TGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCC 65463973 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 || || ||||||||||||| ||| || | || || |||| |||| || | | || Sbjct 65463974 ATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGC 65464033 Query 18793 CTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTA 18852 || ||||| || |||| || || ||||||| | || ||||| || || | || Sbjct 65464034 CTGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTC 65464093 Query 18853 ACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAATAGA 18911 ||||| || || || || ||||| || || |||| | ||||| | ||||| | || Sbjct 65464094 ACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGT-TGATAATGATTTC 65464152 Query 18912 TACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATC 18971 | ||||| | || || || || || || | ||||||| || ||||| Sbjct 65464153 TTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGCA 65464212 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 ||| |||| ||||| ||||| || || | || || ||||| || | ||||||||||| Sbjct 65464213 ACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAG 65464272 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091 ||| | ||| || | ||||||||| || |||| || ||||| |||| || ||||| || Sbjct 65464273 TCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCAC 65464332 Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT-TATGAATCCATTTCA 19150 || ||||| || || | || ||||||||| |||| || || | |||||| || Sbjct 65464333 AGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGCA 65464392 Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210 | ||||| || ||||||||||| ||||| ||||||||||| |||| ||| || ||||| Sbjct 65464393 GGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATT 65464452 Query 19211 TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG-A 19269 | ||| | | |||||||| || | ||| || | | |||||||||||| ||||| Sbjct 65464453 CCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTT 65464512 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 || ||||| || || || || || || || ||||| | || ||||| | ||| ||||| Sbjct 65464513 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 65464572 Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389 | || | || |||| |||||||| ||||| |||||||| || ||||| || || Sbjct 65464573 TGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCC 65464632 Query 19390 AATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCT 19449 | || || ||||||||| | || || | | | | | ||| | | |||||| Sbjct 65464633 AGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCC 65464692 Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || || | || || || ||| | ||||| || |||||||| ||||| || ||||| | | Sbjct 65464693 TTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGC 65464752 Query 19510 CATATATCACGATATTGTATAGGAAA 19535 || |||||| | |||| || ||||| Sbjct 65464753 CAGATATCATGGTATTCGATGGGAAA 65464778 >seq26 Length=66536344 Score = 347 bits (384), Expect = 1e-90 Identities = 644/935 (69%), Gaps = 15/935 (2%) Strand=Plus/Plus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTC---ATTAGAATTCATTACTCCCATTTTT 18672 || ||| ||||||| | ||||||||||||| | ||| ||| ||| |||| || | Sbjct 31519072 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCAC--CTCC-ATCCTC 31519128 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | |||| || |||| ||| || || || || |||| ||| ||| |||| Sbjct 31519129 TGATACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCC 31519188 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 | || ||||| ||||||| ||| || | || || |||| |||| || | | || Sbjct 31519189 ACGAAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCCAGCATAAGC 31519248 Query 18793 CTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTA 18852 | || || || |||| || || ||||| | || ||||| | || | || Sbjct 31519249 GTGTCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTC 31519308 Query 18853 ACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAATAGA 18911 ||||| || || || || ||||| | || | ||| | ||||| | ||||| | || Sbjct 31519309 ACAGGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGT-TGATAATGATTTC 31519367 Query 18912 TACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATC 18971 | ||||| | || || | || || || | ||||||| || ||||| | Sbjct 31519368 TTGTACTCTTTGCTCTGGCGGCTTGCTTACCAGGTGCCTGAACATCAGGCAGGCAAAGCC 31519427 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 ||| |||| | ||| ||||| || || | || || |||||||| | ||||||||||| Sbjct 31519428 ACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCAG 31519487 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091 ||| ||| || | ||||||||| || ||||| || ||||| ||||| || ||||||| Sbjct 31519488 TCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTAC 31519547 Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT-TATGAATCCATTTCA 19150 || ||||| || || | |||||||||||| ||| | || | | |||||| || Sbjct 31519548 AGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAATCCAACGCA 31519607 Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210 | ||||| ||||||| |||||| ||||| ||||||||||| |||| ||| || ||||| Sbjct 31519608 GGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATT 31519667 Query 19211 TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAA 19270 | ||| | | ||||||| ||| || || | | |||||||||||| ||||| Sbjct 31519668 CCCTCTCTTTGGAATCTTTA----ATGTGTCAATGAGGAGACTGTACATTTCAGAATGTT 31519723 Query 19271 TATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCAC 19330 | ||||| || || || || || || || ||||| | || ||||| | ||| ||||| Sbjct 31519724 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTT 31519783 Query 19331 TACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA 19390 | ||| | || |||| |||||||| ||||| |||||||| |||||||| || || | Sbjct 31519784 GGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAAGCCA 31519843 Query 19391 ATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC-AATCATTAATATCT 19449 || || ||||||||| | || || | | || | |||| | | | |||||| Sbjct 31519844 GGACGTGAGATATAAAATGTCTCTCGTCAG-GTTTCAGCGCTTCCTAGTGTTGAATATCC 31519902 Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || || | || || || ||| ||||||| || | ||||| ||||| || ||||| | | Sbjct 31519903 TTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACATCTGC 31519962 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAA 19544 || |||||| | |||| || ||||| | ||| || Sbjct 31519963 CAGATATCATGGTATTCAATGGGAAAGACAACGAA 31519997 >seq9 Length=86001432 Score = 242 bits (268), Expect = 4e-59 Identities = 419/600 (70%), Gaps = 14/600 (2%) Strand=Plus/Plus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCATTTTT 18672 || ||| ||||||| | |||||||||||| | ||||| ||| || ||||| | Sbjct 36369702 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCT---GAATTTGACATCACCCCCATCCTC 36369758 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| | | | || | || |||||||| || || || || |||| ||| ||| |||| Sbjct 36369759 TGATACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCC 36369818 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 || | ||||| ||||||| ||| || | || || ||||||||| || | | || Sbjct 36369819 ATGGAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGC 36369878 Query 18793 CTATCCGCTACAAATTTAATATATGTG-TTCATCATATCACAATTCATTCCTATTAATTT 18851 || ||||| || |||| || || ||| ||||||| || | || || || | || Sbjct 36369879 CTGTCCGCCACGAATTCGATGTA-GTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTT 36369937 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAATAG 18910 ||||| || || || || ||||| || || ||||| | ||||| | |||| || || Sbjct 36369938 CACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACTGCGT-TGATGATGATTT 36369996 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAAT 18970 | ||||| | || || || || || || | ||||||| || ||||| | Sbjct 36369997 CTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGT 36370056 Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 |||| |||| ||||| ||||| || || | || || ||||| || | |||||||||| Sbjct 36370057 CACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCA 36370116 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 |||| ||| | | ||||||||| || ||||| || |||| |||| || ||||| | Sbjct 36370117 GTCCCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCCAG---AGAAGATCCCTTCCA 36370173 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCA 19150 || ||||| || || | || ||||||||| |||| || || | |||||| || Sbjct 36370174 TAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCA 36370233 Query 19151 GTGCCCAATCAGCCTTCTTTTT-TACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 | ||||| |||||||||||||| ||||| ||||||||||| |||| ||| || || ||| Sbjct 36370234 GGGCCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATTGAAGAGCTAC 36370293 >seq87 Length=2570995 Score = 233 bits (258), Expect = 2e-56 Identities = 346/489 (71%), Gaps = 1/489 (0%) Strand=Plus/Plus Query 19047 CCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAAC 19106 ||||||||| || |||| || ||||| ||||| || |||||||| || ||||| | || Sbjct 1819201 CCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCAC 1819260 Query 19107 TAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTT 19166 | || ||||||||| ||||||| || | |||||| | || | ||| || ||||| Sbjct 1819261 AACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCTT 1819320 Query 19167 CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATC 19226 |||||| ||||| ||||||||||| |||| ||| | ||||| | ||| | | ||| Sbjct 1819321 CTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAATC 1819380 Query 19227 TTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCAT 19286 ||||| || | | || | | |||||||||||| ||||| || ||||| || || || Sbjct 1819381 TTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 1819440 Query 19287 CTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGAC 19346 || || || || ||||| || || ||||| | ||| ||||| | ||| | ||||| Sbjct 1819441 TTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGAC 1819500 Query 19347 CAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAA 19406 || ||||||||| |||| ||||||||| | |||| || || | || || ||||| Sbjct 1819501 CAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAAA 1819560 Query 19407 ATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTC 19466 |||| | || || | | | | | ||| | | |||||| || || | || || || Sbjct 1819561 ATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTC 1819620 Query 19467 TTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTG 19526 ||| | |||| || || ||||| ||||| || ||| | | ||| |||||| | || | Sbjct 1819621 CTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACTC 1819679 Query 19527 TATAGGAAA 19535 |||||||| Sbjct 1819680 GATAGGAAA 1819688 >seq42 Length=9663327 Score = 196 bits (216), Expect = 5e-45 Identities = 352/508 (69%), Gaps = 10/508 (2%) Strand=Plus/Minus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCATTTTT 18672 || ||| ||||||| | |||||||||||| | ||||| ||| || ||||| | Sbjct 3436142 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCT---GAATTTGACATCACCCCCATCCTC 3436086 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| | | | || | || |||||||| || || || || |||| ||| ||| |||| Sbjct 3436085 TGATACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCC 3436026 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 || | ||||| ||||||| ||| || | || || ||||||||| || | | || Sbjct 3436025 ATGGAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGC 3435966 Query 18793 CTATCCGCTACAAATTTAATATATGTG-TTCATCATATCACAATTCATTCCTATTAATTT 18851 || ||||| || |||| || || ||| ||||||| || | || || || | || Sbjct 3435965 CTGTCCGCCACGAATTCGATGTA-GTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTT 3435907 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAATAG 18910 ||||| || || || || ||||| || || ||||| | | || | ||||| | || Sbjct 3435906 CACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAGGCGT-TGATAATGATTT 3435848 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAAT 18970 | ||||| | || || || || || || | ||||||| || ||||| | Sbjct 3435847 CTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGT 3435788 Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 |||| |||| ||||| ||||| || || | || || ||||| || | |||||||||| Sbjct 3435787 CACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCA 3435728 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 |||| | ||| || | ||||||||| || ||||| || ||||| ||||| || ||||| | Sbjct 3435727 GTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCA 3435668 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCC 19118 | || ||||| || || | || |||||| Sbjct 3435667 CAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||||| |||| || || | |||||| || ||||| || ||||||||||| ||| Sbjct 3435513 CCATAGGTAGCTTCTTTGTCCCCAATCCAACGAAGGGCCCAGTCGGCCTTCTTTTTCACA 3435454 Query 19177 CATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATAT 19236 || ||||||||||| |||| ||| || ||||| | ||| | | |||||||| || Sbjct 3435453 CAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAATGTAA 3435394 Query 19237 GCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCG 19296 | ||| || | | |||||||||||| ||||| || ||||| || || || || || || Sbjct 3435393 GTATCGATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCA 3435334 Query 19297 TAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| | || ||||| | ||| ||||| Sbjct 3435333 TAGAAACAGCGGGCCTCTGTAACCTGAACTTC 3435302 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||||| |||| || || | |||||| || ||||| || ||||||||||| ||| Sbjct 3436399 CCATAGGTAGCTTCTTTGTCCCCAATCCAACGAAGGGCCCAGTCGGCCTTCTTTTTCACA 3436340 Query 19177 CATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATAT 19236 || ||||||||||| |||| ||| || ||||| | ||| | | |||||||| || Sbjct 3436339 CAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAATGTAA 3436280 Query 19237 GCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCG 19296 | ||| || | | |||||||||||| ||||| || ||||| || || || || || || Sbjct 3436279 GTATCGATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCA 3436220 Query 19297 TAAAAACATCTTGCTTCTGTTAT 19319 || ||||| | || ||||| || Sbjct 3436219 TAGAAACAGCGGGCCTCTGTAAT 3436197 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | || || ||||| || | |||||||||||||| | ||| | Sbjct 3436661 CCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 3436602 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||| ||||| || ||||| || || ||||| | Sbjct 3436601 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 3436542 Query 19103 CAACTAGTCTTTCTCC 19118 | || | || |||||| Sbjct 3436541 CCACAACTCGTTCTCC 3436526 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| |||||||| ||||| ||||||||||| ||||| || || | || || ||| Sbjct 3434567 ACCAGGTTTTCATTGACTATGCCATCACTAGCCGCAAAGAAAGCCAGGACGTGAGATATA 3434508 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 |||||| | || || | | | | | ||| | | |||||| || || | || || Sbjct 3434507 AAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACC 3434448 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 || ||| | ||||| || |||||||| ||||| || ||||| | ||| |||||| | ||| Sbjct 3434447 TCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTAT 3434388 Query 19525 TGTATAGGAAA 19535 | || ||||| Sbjct 3434387 TCGATGGGAAA 3434377 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTC---ATTAGAATTCATTACTCCCATTTTT 18672 || ||| ||||||| | |||||||||||| | ||| || ||| || ||||| | Sbjct 3438637 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGA---CATCACCCCCATCCTC 3438581 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| ||| | |||| || |||||||| || || || || |||| ||| ||| |||| Sbjct 3438580 TGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCC 3438521 Query 18733 ATAAAATCAAATGGATTTTTTACATT 18758 || || ||||| ||||||| ||| || Sbjct 3438520 ATGAAGTCAAACGGATTTTCTACTTT 3438495 >seq73 Length=3316092 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | || || || | || || ||||| || || || || || ||| Sbjct 2397342 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAT 2397283 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 2397282 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2397223 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 2397222 TTTCTTATACCATA 2397209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562064288009400