Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq67 104 3e-17 seq24 87.8 2e-12 seq257 86.0 8e-12 >seq67 Length=3888883 Score = 104 bits (114), Expect = 3e-17 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 2228 CAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGA 2287 ||| |||| || |||| | |||| ||| |||||||||||| ||||||||| |||| || Sbjct 3327698 CAACCACACTCGCCTGTTTGAGAACGGGAGCTGCGAGATCCACCTGACCTGTACTGTGGA 3327639 Query 2288 GGATCCCAATGACAACATCTCCTTCAAATGGG----AGGCCTTGGGCAAGA-CGCTTCTA 2342 | | || ||| | | || | |||| |||| |||||| || || | | ||| || Sbjct 3327638 GAACCCAAATCATA----CTGCCTCAATTGGGTGGCAGGCCTCAGGAAACATCTCTT-TA 3327584 Query 2343 CGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACG 2402 | || || || |||| |||||||||||| | ||| | |||| |||| ||||| Sbjct 3327583 GGGGACCCAAATATCACTGTCTCCTGGGACCCAAAGAATTCCCGTGACCAGAGTTACACC 3327524 Query 2403 TGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGA 2454 ||| ||| ||| |||| ||||| || ||| || | ||||| ||||||| Sbjct 3327523 TGCCACGCTCTGAACCCTGTCAGCAAGCTGTCTGTCTCTGTCTCTGCCCAGA 3327472 >seq24 Length=54861783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 14177 GCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGC 14236 ||| ||||| || || | ||||||||||| ||| || |||||||| || || | ||| Sbjct 54424594 GCCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGTACCACCACAGC 54424535 Query 14237 TACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTG 14296 | |||| || || || || |||||||| || || | || || | | || | || || Sbjct 54424534 TGCCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACAAGGTCCATGTCCTG 54424475 Query 14297 ACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAA 14356 | ||||| ||||| |||| | ||| || | | || ||||| || || |||| || Sbjct 54424474 GGTCTGATCCTCTCCATCTCTCTGCCAGGTCAGGATGATGTCAGCAGGGTAGAAACTCAG 54424415 Query 14357 AGCCCAGCACC 14367 |||||||||| Sbjct 54424414 GGCCCAGCACC 54424404 Score = 82.4 bits (90), Expect = 1e-10 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 14190 ACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGA 14249 |||| ||||||||||| ||| || |||||||| || || | |||| |||| || || Sbjct 54379785 ACGTGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCTGCCCACTTCTGG 54379844 Query 14250 AACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCT 14309 || || ||||| || ||||| | || || | | ||| | || || | || || || Sbjct 54379845 AAGGTTCCATCCCCTGCTGGTCTGGTCTCCACCAACTCCATGTCCTGGGTCTGGTCCTCC 54379904 Query 14310 CCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 || |||| | ||| || | | || || | ||||| ||||||| ||||||||||| Sbjct 54379905 CCATCTCTTTGCCAGGTCAGGGTGATCTCCGAAGGATAGAAACCCAGAGCCCAGCACC 54379962 >seq257 Length=108604 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| || |||||||| || || | |||| Sbjct 44364 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 44423 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || || || | || || | | | || | || || Sbjct 44424 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTTTCCACCAGTTCCATGTCCTGG 44483 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || ||||| ||||| | | ||| || | |||| ||||| || || || || | | Sbjct 44484 GTCTGGTCTTCCCCGTCCCTCTGCCAGGTCAGGGTTATCTCAGCTGGGTAGAATCCAAGA 44543 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 44544 GCCCAGCACC 44553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629233368636600