Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4 178 2e-39 seq26 158 1e-33 seq87 122 1e-22 seq42 82.4 9e-11 >seq4 Length=96435083 Score = 178 bits (196), Expect = 2e-39 Identities = 502/767 (65%), Gaps = 8/767 (1%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||||| | ||||| || || ||||| | || || || |||||||||||||| Sbjct 65463898 CATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 65463957 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 |||||| ||||||||||| || ||||||||||| | || | || | || | Sbjct 65463958 TAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCC 65464017 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 || ||| || |||||| ||||| || ||||| ||||| | ||| || | |||| Sbjct 65464018 TAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTT 65464077 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111 || || || || || || || | || || ||||| | |||| | || || Sbjct 65464078 CATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGC 65464137 Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATT---TAAA 37168 | ||| || | | ||| || || || | | || | | || Sbjct 65464138 GTTGATAATGATTT---CTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAA 65464194 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 || | || ||||| ||| |||||||| |||||||| || || | || || ||||| Sbjct 65464195 CATCAGGCAGGCAAAGCAACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAA 65464254 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288 || | || ||||| | || | ||| || | ||| ||||||| |||| || ||||| Sbjct 65464255 CGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGA 65464314 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA-CTAT 37347 |||| || ||||| || || ||||| || |||| ||| || | || | || | Sbjct 65464315 GAAGAGGATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTT 65464374 Query 37348 AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAA 37407 | |||||| | ||| || ||||| ||| ||||| ||||| |||| Sbjct 65464375 GTCCCCCAATCCAACGCAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAA 65464434 Query 37408 TTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAAC 37467 | || || |||||| | | | |||| |||| | || |||||||| || || | || Sbjct 65464435 TAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGAC 65464494 Query 37468 TATACATTTCAGAGTGA-ATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 | ||||||||||| || || ||||| || || || || || ||||| ||||| | || Sbjct 65464495 TGTACATTTCAGAATGTTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCC 65464554 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || | | ||||| || | || | || | | ||||||||| ||||| |||||| Sbjct 65464555 TCTGTAACCTGAACTTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCA 65464614 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 || || ||||||||||| || || | |||||||||||| || || Sbjct 65464615 CTCGCAGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTC 65464661 >seq26 Length=66536344 Score = 158 bits (174), Expect = 1e-33 Identities = 312/460 (68%), Gaps = 5/460 (1%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| |||| ||||||| |||||||| || || | || || ||||| || | Sbjct 31519417 CAGGCAAAGCCACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGG 31519476 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | || ||| || | ||| ||||||| |||||||| ||||| ||||| Sbjct 31519477 CCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAG 31519536 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAG-A 37354 || |||| || || ||||| || |||| | | || | || | | | || | Sbjct 31519537 ATGTCTTCTACAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCA 31519596 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||| | ||| || |||| ||| ||||| ||||| ||||| || || Sbjct 31519597 AATCCAACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATT 31519656 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 |||||| | | | |||| |||| | || || ||||| || | ||| ||||| Sbjct 31519657 GAAGAGATATTCCCTCTCTTTGGAATCTTTAAT----GTGTCAATGAGGAGACTGTACAT 31519712 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 |||||| || | ||||| || || || || || ||||| ||||| | || || | | Sbjct 31519713 TTCAGAATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAAC 31519772 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 ||||| || | ||| | || | | ||||||||| ||||| |||||||| ||||| Sbjct 31519773 CTGAACTTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGC 31519832 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||||| || || | |||||||||||| || ||| Sbjct 31519833 AAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCA 31519872 >seq87 Length=2570995 Score = 122 bits (134), Expect = 1e-22 Identities = 250/372 (67%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 37262 CCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTAC 37321 ||| ||||||| ||||||| ||||| ||||| || ||||| || || ||||| | || Sbjct 1819201 CCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCAC 1819260 Query 37322 AAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTT 37381 || ||| || | || | | | || |||||| | ||||| || ||||| Sbjct 1819261 AACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCTT 1819320 Query 37382 TAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATC 37441 ||| ||||| ||||| ||||| || || | ||| | | | |||| ||| Sbjct 1819321 CTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAATC 1819380 Query 37442 TGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTAT 37501 | | || || || |||| || | ||| ||||||||||| || || ||||| || || || Sbjct 1819381 TTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 1819440 Query 37502 CTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGC 37561 || || ||||| ||||| || || || | | ||||| || | ||| | || | Sbjct 1819441 TTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGAC 1819500 Query 37562 TAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAA 37621 | |||||||| |||| |||||||| | |||||||||| || || | |||||| Sbjct 1819501 CAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAAA 1819560 Query 37622 ATGTCTTTCATC 37633 |||||| || || Sbjct 1819561 ATGTCTCTCGTC 1819572 >seq42 Length=9663327 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||| || ||||| ||| ||||| ||||| ||||| || || |||||| | | | Sbjct 3435475 CCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCT 3435416 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 |||| |||| | || |||||||| || || | ||| ||||||||||| || || || Sbjct 3435415 CTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATGTT 3435356 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACA 37519 ||| || || || || || ||||| ||||| Sbjct 3435355 TTCCATGGCAATTTGGAAGCCATAGAAACA 3435326 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||| || ||||| ||| ||||| ||||| ||||| || || |||||| | | | Sbjct 3436361 CCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCT 3436302 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 |||| |||| | || |||||||| || || | ||| ||||||||||| || || || Sbjct 3436301 CTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATGTT 3436242 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACA 37519 ||| || || || || || ||||| ||||| Sbjct 3436241 TTCCATGGCAATTTGGAAGCCATAGAAACA 3436212 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||||| | ||||| || || ||||| | || || || |||||||| ||||| Sbjct 3438596 CATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTC 3438537 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||| ||||| Sbjct 3438536 TAGTGAAATATTTTCCATGAAGTCAAACGGATT 3438504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592269895913400