Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq26 379 2e-100 seq8 140 3e-28 seq22 129 5e-25 seq13 114 1e-20 seq46 111 1e-19 seq17 91.5 1e-13 >seq26 Length=66536344 Score = 379 bits (420), Expect = 2e-100 Identities = 502/690 (73%), Gaps = 5/690 (1%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| ||| ||||| | || |||||| | ||||| || || | |||| ||||| Sbjct 25929482 TGGGAAAGG-TCTTGGCTCTCGCTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGT 25929540 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || || ||||||| |||||||||||| || || || | ||| || ||| ||| | Sbjct 25929541 AAATATGTGCATCTCCCAAGGTGTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTG 25929600 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||||||| || || || | |||||||| ||||| ||||| || || || ||||| | Sbjct 25929601 CAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATAT 25929660 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGCTCACGTAAAACTGACAC 30003 | |||||||||||||||||||| || || ||||| || ||||| || || || ||||| Sbjct 25929661 CTCCCGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCT-ACATAGAATTGACAG 25929719 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30063 | || ||||| ||||| || ||||| ||| | ||||| ||||||||||| |||| | Sbjct 25929720 AGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATG 25929779 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | ||||| || ||| || | ||||| ||| | | ||||||||||| || Sbjct 25929780 ATGATTCTTCTGTCATCAGGGCTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCT 25929839 Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 || || |||||||| |||| ||| || |||| ||||| || ||||| |||||| Sbjct 25929840 ACTCCTTGACCCGAGTAATCTGATTCCATATCTTTGTAGTCTGCGCCAAAATGTCTCCAC 25929899 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTC 30242 ||||| || || || || ||||| || || || | | |||| ||| ||| |||| Sbjct 25929900 TGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTC 25929958 Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302 || ||| |||| ||| || ||||| |||||||| | || || || ||| || ||||| Sbjct 25929959 CAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTT 25930018 Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362 | |||||||| || ||| |||||||||| ||||||| ||| ||||||| || || Sbjct 25930019 AGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACAC 25930078 Query 30363 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAA 30422 | ||||| ||||| || ||||| | | | ||| ||| | |||| || || Sbjct 25930079 TCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGTTGTATCTCACCTGCATGCCGAA 25930138 Query 30423 CACGGACAAGACTCCCGTGCCCGTCCTGTC 30452 ||| |||||| || |||||||| | ||| Sbjct 25930139 CACCGACAAGGTGCCGGTGCCCGTGCGGTC 25930168 >seq8 Length=88571779 Score = 140 bits (154), Expect = 3e-28 Identities = 215/304 (71%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||| ||||||||||| || || || || ||||| || Sbjct 15948542 CATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATC 15948601 Query 30210 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 || || | | |||| ||| ||| |||||| ||| |||| ||| || ||||| | Sbjct 15948602 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 15948660 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 ||||||| | || || || ||| || ||||| | |||||||| || ||| |||| Sbjct 15948661 CCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACC 15948720 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACT 30388 |||||| ||||||| ||| ||||||| || || | ||||| ||||| || ||||| | Sbjct 15948721 ACAGCAATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATT 15948780 Query 30389 GTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCC 30448 | | ||| ||| | |||| || ||||| |||||| || |||||||| | Sbjct 15948781 CATCTCTCAGGTTGTATCTCACCTGCATGCCGAACACCGACAAGGTGCCGGTGCCCGTGC 15948840 Query 30449 TGTC 30452 ||| Sbjct 15948841 GGTC 15948844 Score = 127 bits (140), Expect = 2e-24 Identities = 130/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 15942880 TAGGCCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGG 15942939 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGC 29986 || || || ||||| || |||||||||||||||||||| || || ||||| || |||| Sbjct 15942940 CACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCGC 15942999 Query 29987 TCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 | || || || ||||| | || ||||| ||||| || ||||| ||| Sbjct 15943000 T-ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 15943045 >seq22 Length=61813736 Score = 129 bits (142), Expect = 5e-25 Identities = 253/372 (68%), Gaps = 19/372 (5%) Strand=Plus/Plus Query 30016 GGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTG 30075 |||||||| |||| ||| | ||||| ||||||||| | || | ||||| | || Sbjct 17833802 GGAGGAAGTACCATAAGGGGAAGATCTTTTGGGTTCCAGACACAAATCATGATTCTTCTC 17833861 Query 30076 TCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCC 30135 || || || ||| | ||| ||| | | ||||||||||| || || || Sbjct 17833862 TCGTCAGGATTGGTTTTGAGT--GTCAATCACTTTTTGCAGCTGTTCTACTCCT------ 17833913 Query 30136 GAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTAC 30195 || || ||| || |||| ||||||| ||||| ||||||||||| || || Sbjct 17833914 --------TGACC-CATATCTTTGTAGTCTGCTCAAAAATGTCTCCACTGGAAACCATAA 17833964 Query 30196 ACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCT 30254 || || |||||||| || || | | |||| ||| ||| | |||||| ||| ||| Sbjct 17833965 ACTGGGCCCAGGTCCCCTTCCTGTC-GTGCAGAGAATCCCATGCTGTCCAGAAAAACTCG 17834023 Query 30255 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA 30314 ||| || ||||| |||||||| | || || || ||| || ||||| | |||||| | Sbjct 17834024 GGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGCA 17834083 Query 30315 CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30374 ||| ||| |||||||||| ||||| || || ||||| | || || | ||||| || Sbjct 17834084 TCCTTTGATAAACCACAGCAACTCCTTCAAAACACCCTTCTAGAACACTCGTTTGGTTGT 17834143 Query 30375 GAGGAGGGGAAA 30386 ||| || | ||| Sbjct 17834144 GAGCAGAGAAAA 17834155 >seq13 Length=46045664 Score = 114 bits (126), Expect = 1e-20 Identities = 127/167 (76%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 164539 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 164480 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC-CGTCGC 29986 || || || ||||| | || ||||||||||||||||| || || ||||| | |||| Sbjct 164479 CACACCCAGGCCCATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTATTCGC 164420 Query 29987 TCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 | || || || || || | || ||||| ||||| || ||||| ||| Sbjct 164419 T-ACATAGAATTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 164374 >seq46 Length=7398006 Score = 111 bits (122), Expect = 1e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 29865 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29924 || ||| || ||| ||| || |||||||| ||||| || | ||| |||| ||||| || Sbjct 7346702 TTTTAGGCCTATGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGATGGCAATGTTGAA 7346761 Query 29925 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GT 29983 ||| || || || ||||| || || ||||||||||||||||| || || ||||| || | Sbjct 7346762 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATT 7346821 Query 29984 CGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 | || || || || ||||| | || ||||| || || || ||||| ||| Sbjct 7346822 CACT-ACATAGAATTGACAGAGGGCATGGCAAGGGGGCAGTGCCATCAGG 7346870 >seq17 Length=65020687 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||| |||||||| |||| || || |||||| | | ||||| |||||| || || Sbjct 8177119 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 8177178 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || | ||||| ||||||| |||||| || ||| Sbjct 8177179 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 8177226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408586051528955