Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 163 5e-35 seq26 152 1e-31 seq42 125 1e-23 seq9 114 2e-20 seq61 93.3 8e-14 >seq4 Length=96435083 Score = 163 bits (180), Expect = 5e-35 Identities = 405/601 (67%), Gaps = 23/601 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||||||||| || | || |||||| || || ||| | || Sbjct 65464760 GATATCTGGCAGATGTACAAGAAAGCCGAGGCTTCCTTCTGGACGGCTGAGGAGGTCGAC 65464701 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||||||| || | |||| | || || | || |||||| |||||| | Sbjct 65464700 CTCTCCAAGGATATTCAACACTGGGAAGCGCTGAAACCC--GACGAGAGACATTTTATAT 65464643 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| |||| |||||||| || |||||| ||||| || || || ||| ||| Sbjct 65464642 CTCACGTCCTGGCTTTCTTTGCTGCGAGTGATGGCATAGTCAATGAAAACCTGGTGGAGC 65464583 Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| | ||||| ||| ||| |||||| |||||||| || ||||| || || Sbjct 65464582 GCTTCAGCCAAGAAGTTCAGGTTACA--GAGGCCCGCTGTTTCTATGGCTTCCAAATTGC 65464525 Query 25710 CATCGAAAATGTG-CACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAG 25765 ||| ||||| | || ||||| |||| || || || || || ||||||| || Sbjct 65464524 CATGGAAAACATAACATTCTGAAATGTA---CAGTCTCCTCATCGATACTTACATTAAAG 65464468 Query 25766 ACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | | ||||| || || || ||| || ||| || || | | || | || Sbjct 65464467 ATTCCAAAGAGAGGGAATATCTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGA 65464408 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTG 25884 |||| |||||| || ||||| | || || ||||| | ||| || || | Sbjct 65464407 AGGCCGACTGGGCCCTGCGTTGGATTGGGGGACAAAGAAGCTACCTATGGAGAACGAGTT 65464348 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||||||||||||||| || ||| | ||| || || |||| | | || |||||| Sbjct 65464347 GTGGCCTTTGCTGCTGTGGAAGGGATCCTCTTCTCTGGCTCCTTTGTGTCAATATTCTGG 65464288 Query 25945 CTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||||| || || ||| |||||||||||||| || ||||| | Sbjct 65464287 CTCAAGAA-ACGGGGACTGATGCCTGGCCT-TACGTTTTCCAACGAGCTTATTAGCAGAG 65464230 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | |||||| | ||| | |||||||||||| | | || | ||| || | ||||| | Sbjct 65464229 ATGAGGGTTTACACTGTTGCTTTGCCTGCCTGATGTTCA---GGCACCTGGTACACAAGC 65464173 Query 26063 C 26063 | Sbjct 65464172 C 65464172 >seq26 Length=66536344 Score = 152 bits (168), Expect = 1e-31 Identities = 381/568 (67%), Gaps = 17/568 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||||||||| || | || |||||| || || ||| | || Sbjct 31519970 GATATCTGGCAGATGTACAAGAAAGCCGAGGCCTTCTTCTGGACAGCTGACGAGGTGGAC 31519911 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||||||| || | || | | || || | || |||||| |||||| | Sbjct 31519910 CTCTCCAAGGATATTCAACACTAGGAAGCGCTGAAACCT--GACGAGAGACATTTTATAT 31519853 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| |||| |||||||||||| |||||| ||||| || || || ||| ||| Sbjct 31519852 CTCACGTCCTGGCTTTCTTTGCAGCCAGTGATGGCATAGTCAATGAAAACCTGGTGGAGC 31519793 Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | || | | ||||| ||| ||| |||||| |||||||| || ||||| || || Sbjct 31519792 GCTTTAGCCAAGAAGTTCAGGTTACA--GAGGCCCGCTGTTTCTATGGCTTCCAAATTGC 31519735 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GACGTACATTACAGACG 25768 ||| ||||| || ||||| |||| || || || || ||| |||||| ||| Sbjct 31519734 CATGGAAAACAAACATTCTGAAATGTA---CAGTCTCCTCATTGAC--ACATTAAAGATT 31519680 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || ||| || ||| || || | | || | | ||| Sbjct 31519679 CCAAAGAGAGGGAATATCTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGTAGG 31519620 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTA 25887 | |||||| || ||||| || || | | |||| | ||| || | | || Sbjct 31519619 CTGACTGGGCCCTGCGTTGGATTTGGAGACAAAAAGACTACCTATGGAGAAAGAGTTGTG 31519560 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 |||||||||||||| || | |||||| ||| || || |||||| | || ||||||||| Sbjct 31519559 GCCTTTGCTGCTGTAGAAGACATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGGCTC 31519500 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| | |||| ||||| || || ||| |||||||| ||||| || ||||| || || Sbjct 31519499 AAGAAACAGGGACTGATGCCTGGCCT-TACATTTTCCAAAGAGCTTATTAGCAGAGATGA 31519441 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTG 26034 | || | ||| | | |||||||||||| Sbjct 31519440 GCGTTTACACTGTGGCTTTGCCTGCCTG 31519413 >seq42 Length=9663327 Score = 125 bits (138), Expect = 1e-23 Identities = 140/181 (77%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||||||||||||||| || ||||| ||| || || |||||| | || |||||| Sbjct 3435652 GTGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGG 3435711 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||||| || || ||| |||||||||||||| || ||||| | Sbjct 3435712 CTCAAG-AAACGGGGACTGATGCCTGGCCT-TACGTTTTCCAACGAGCTTATTAGCAGAG 3435769 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | |||||| | ||| | || |||||||||||| | | || | ||| || | ||||| | Sbjct 3435770 ATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCA---GGCACCTGGTACACAAGC 3435826 Query 26063 C 26063 | Sbjct 3435827 C 3435827 Score = 100 bits (110), Expect = 5e-16 Identities = 101/126 (80%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||||||||||||||| || ||||| ||| || || |||||| | || |||||| Sbjct 3436538 GTGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGG 3436597 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||||| || || ||| |||||||||||||| || ||||| | Sbjct 3436598 CTCAAG-AAACGGGGACTGATGCCTGGCCT-TACGTTTTCCAACGAGCTTATTAGCAGAG 3436655 Query 26003 ACGAGG 26008 | |||| Sbjct 3436656 ATGAGG 3436661 >seq9 Length=86001432 Score = 114 bits (126), Expect = 2e-20 Identities = 306/465 (66%), Gaps = 20/465 (4%) Strand=Plus/Minus Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 ||||| | ||| || || | || |||||||||||| |||| || ||||| | || Sbjct 36370210 GCTACCTATGGAGAACGAGTTGTGGCCTTTGCTGCTATGGAAGGGATCTTCTCTGGC--- 36370154 Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTT 25981 || |||||| | || |||||||||| | | | ||||| ||||| || || ||| |||| Sbjct 36370153 TCTTTTGCGTCAATATTCTGGCTCAGGAA-ACTGGGACTGATGCCTGGCCT-TACGTTTT 36370096 Query 25982 CCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||||||| || ||||| || |||||| | ||| | || |||||||||||| | | || Sbjct 36370095 CCAACGAGCTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCA 36370036 Query 26042 CGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTG 26101 | ||| || | ||||| || | | | | || | ||||||| | || | Sbjct 36370035 ---GGCACCTGGTACACAAGCCGCCGGAGCAAAGAGTACAAGAAATCATCATCAACGCAG 36369979 Query 26102 TGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACA 26161 || ||| ||| ||||||||| | || || | | Sbjct 36369978 TGAGGATAGAGCAGGAGTTTCTCACGGAGGCCCTGCCTGTGAAGCTCATCGGGATAAGCT 36369919 Query 26162 ACAGACTCATGAGCCAATACATTGAGTATGTGGCCGAC---CATCTGCTGTGCCAGCTGG 26218 || || |||| || ||||| || | ||||| ||| | | ||||| |||| | Sbjct 36369918 GCACCCTGATGAAGCACTACATCGAATTCGTGGCGGACAGGCTTATGCTG---GAGCTAG 36369862 Query 26219 GACTC-GCCAGACTCT-ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTT 26276 || || || ||| | | | |||| || ||||| |||| |||||||| || || | Sbjct 36369861 GATTCAGCAAGATTTTCAAAGTA--GAAAATCCGTTTGACTCCATGGAAAATATTTCACT 36369804 Query 26277 GGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||| ||||||||||| ||| | || ||| | ||||| Sbjct 36369803 AGAAGGGAAGACAAACTTCTTTGAGAAGCGCGTGGGCAAGTATCA 36369759 >seq61 Length=4506808 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| ||| | || ||| || || ||||| || ||||||| Sbjct 586064 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 586123 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || ||||||||| || ||||| || || || |||||||||||| Sbjct 586124 GGCTGAAGAAGAGAGGCCTCATGCCCGGACT-CACTTTCTCGAATGAACTCATCAGCAGG 586182 Query 26002 GACGA 26006 || || Sbjct 586183 GATGA 586187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928771247102400