Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 seq174 86.0 8e-12 >seq2 Length=98408828 Score = 159 bits (176), Expect = 4e-34 Identities = 223/310 (72%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760 ||| |||||||| || ||||||| | | | | || | |||| || ||| | |||| Sbjct 56213052 AGTGGAAGTGGTCACGCAGGATG-AGAGAAAGCTGCTGCACACGCCTGCATCCTTAAGAT 56212994 Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820 | || ||||| | |||||||| || ||||| || ||||| || |||||||||||| Sbjct 56212993 GTTCTCTGAAACGCTCCCAAGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAA 56212934 Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880 | |||||||| |||| ||| || ||||||||||| || || || | ||||| |||||| Sbjct 56212933 GCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGAGTTGTAGTCCAGCCTGCATATA 56212874 Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940 ||| || | || || || || | || || | |||| || || || || ||||| Sbjct 56212873 GAGACAGGGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACA 56212814 Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000 |||| ||||| || || ||||| || |||||||| || |||| || | |||||| ||| Sbjct 56212813 CAACCCTGGACGACGAGGGCTGCTACATGTGTCTCTTCAATACTTTTGTTTCTGGGAAGA 56212754 Query 154001 TATCGGGAAC 154010 | || || || Sbjct 56212753 TCTCAGGGAC 56212744 >seq174 Length=498095 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 |||||||| | | |||||||| ||| ||| || ||||||||||| | |||||||| | Sbjct 348768 AGAATTTCCTGAATAGATACAAGGGAGATTCTGACCACTGGATCGGCCTGCACAGAGAGT 348827 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGT 2770 ||||||| || || |||| |||| | ||||| || ||| ||| ||| ||| || Sbjct 348828 CATCAGAGCACCCTTGGATATGGACAGATAACACTGAATATAACAACTGGTATGT 348882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649247783619600