Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq8 407 2e-108 seq4 86.0 7e-12 >seq8 Length=88571779 Score = 407 bits (450), Expect = 2e-108 Identities = 679/981 (69%), Gaps = 3/981 (0%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| || |||| ||| || |||||| || ||| || ||||| || Sbjct 47381446 CAGATGCTCATCCAAGCACTGGATGGCAAAGGGGTCAACATCAATGTCAAACTTATTGGC 47381505 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||| | ||||| || | || |||||| || ||| | | ||||| | ||| || Sbjct 47381506 GAAAAAGTGGTGT---TTGCGAAGCATCCAGCTCAAGTCAGCAGCTCCGAAAATGCACAC 47381562 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| |||| || || ||| |||| || ||||| |||| ||||| | || |||||||| Sbjct 47381563 GGAGCGTACATGGACTCCGCTGCACGGTGGGTAAGGAGCGCCTTTGGAAACATCACCTTC 47381622 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || | || | ||||||||| ||| || || | Sbjct 47381623 AAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCGGACAAGTCATACTTATG 47381682 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 || ||| | | ||| || || | || || | || | ||||||||| |||| || Sbjct 47381683 GCTCGAGGGGAGAGAACCAGGGACTTCAGGGATCCTTTGGATGGTGGCCCAGAGGTACTC 47381742 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || ||||| |||||||||| | ||| |||||||||| | ||| || | || Sbjct 47381743 ATCTGGGCTATACGTGTCCTGTGCCCACTCCATGAACTTTTGGATGTCCCCATTTTCTAG 47381802 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | ||||| || | || |||||||| |||||||| ||||| | || | Sbjct 47381803 CACATAGCCTACGTATTCCCTACTGACCACAAAGTAGGCGCTGCCTGAGAAAAGAGGAGT 47381862 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | | |||||| | ||||| || || ||||| | || | || | || | | Sbjct 47381863 TGTGAGGGGCGGCTGGGCTTTGGCCACCCCAGTGTTTGTCAGCTTCCCGTCGACAACGGT 47381922 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 |||||||||||||||||| || ||||| || ||||| || || || || |||| Sbjct 47381923 GTGTCGCTTCTTCCACCTTTCCTCCTTGTTTGGAGGCATCTTCTCGGTTTCCAGGTTGTT 47381982 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 | || || || || || | | |||| || || ||||| || || || || ||||| Sbjct 47381983 TTCGCCCAGGAATGACTTGAGTTTCCTGACCATTTCCAGGTTGGTTTTCAGAGGGAAGTC 47382042 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711 ||||||| | ||| |||| ||||||||| || || |||| | || |||||||||||| Sbjct 47382043 CATACCGCAGAGGTTGATCAAGTACTTCCAGTTTGCACTCATGCTGTACAGGTCCCTCAT 47382102 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 ||| || | || ||||| || || |||||||| || || | ||| |||| || | || Sbjct 47382103 GCAGTTGAGGTCAGCCTGAACCCGACTCCAGGACGCATAAATGACGCTCTCCAGCTGGCT 47382162 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTT 160831 ||||||||||||||| | || || ||| | || ||| |||||| || || || Sbjct 47382163 GGCCACAAAGACGTTCTTCAAGCAGGACGCAATGCCCGTCACCGCGGCTAAAAAGGGCTC 47382222 Query 160832 ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAG 160891 || || ||| ||||||||| | |||||| | ||||||||| ||||||||||| || Sbjct 47382223 CTCTGCTTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATGGCCCTCAG 47382282 Query 160892 CAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 | |||||| | ||| || ||||| ||||| | ||| || ||||| || || ||||| || Sbjct 47382283 GAGCCTCTCAAGCATTTCAATCTTGTGATGAACCACTATGGAGTACGCGATGGGAAAGTC 47382342 Query 160952 GGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACA 161011 | |||||| ||| || | | | | ||||| ||| || |||| ||| | |||| Sbjct 47382343 TGCCTCCTCTTTACTAAGAGGCTCTACAATATACTTGCGCATCCTGATGAAAGAGGCACA 47382402 Query 161012 ATCCCGCGTCATGTTGATATA 161032 || || |||||||| ||||| Sbjct 47382403 GTCACGGGTCATGTTTATATA 47382423 >seq4 Length=96435083 Score = 86.0 bits (94), Expect = 7e-12 Identities = 178/265 (67%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| |||||| || |||||||||| ||| || ||||| | | ||||| | || Sbjct 69448868 GGTGATGGTTCTGAAGTATCCAGTGCAGGTCCCCAGACCCATAAATACAGACAGCCCGCT 69448809 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| || || ||||| | |||| | || || | | | | ||| || |||| || || Sbjct 69448808 GGTGGACTCCTGAACAAGGTGTGTACGGCGCCCCATCCTCGATGTCTCCCTCGTGGTCCT 69448749 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 |||| || | ||| || || || ||| || ||| ||| ||||| || || Sbjct 69448748 GCCATTTGGTTAGCCTTGCAATAGCTCTCATATCTGAGAGGTCAAATTTGGGGTGCAAGG 69448689 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 || | | || || | | | |||||| ||||||||||| ||||| || || || | Sbjct 69448688 GAGCTGATCCAGGCATCCAAGAGGCACGCTGGAGGGTGGCCCAAAGGTGCTCATCAGGAC 69448629 Query 160360 TGTACGTGTCCTTAGACCATTCCAT 160384 |||| ||||| || | |||||| || Sbjct 69448628 TGTAGGTGTCTTTTGCCCATTCGAT 69448604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577173491454600