Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq42 82.4 9e-11 seq4 82.4 9e-11 >seq42 Length=9663327 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 ||||| |||||||| |||||||| ||| || || |||||||| ||||||||||||||| Sbjct 3438504 AATCCGTTTGACTTCATGGAAAATATTTCACTAGAAGGGAAGACAAACTTCTTTGAGAAG 3438563 Query 65503 CGAGTTGGGGACTAT 65517 ||||| || || ||| Sbjct 3438564 CGAGTGGGCGAGTAT 3438578 >seq4 Length=96435083 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 |||||||||||||| |||||||| ||| || || || ||||| ||||||||||||||| Sbjct 65463990 AATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAAACTTCTTTGAGAAG 65463931 Query 65503 CGAGTTGGGGACTAT 65517 ||||| || || ||| Sbjct 65463930 CGAGTGGGCGAGTAT 65463916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596522359144800