Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq17 95.1 2e-14 seq38 86.0 1e-11 seq33 86.0 1e-11 >seq17 Length=65020687 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || || || | ||| || | || || || ||||| || | ||| Sbjct 35302203 ATGTTGTAGTCAGACAAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 35302262 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| |||||||| ||||| || || |||| ||| | |||| ||||| Sbjct 35302263 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTG 35302322 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || ||||| || || || || ||||| ||||| || || || || || || ||| Sbjct 35302323 TCCGAGAGTTCAACCTCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGC 35302382 Query 193359 AT 193360 || Sbjct 35302383 AT 35302384 >seq38 Length=14253900 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || || || | ||| || | || || || ||||| || | ||| Sbjct 298728 ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 298787 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| |||||||| ||||| || || |||| || | |||| ||||| Sbjct 298788 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTG 298847 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||||| || | || || ||||| || | || || ||||| || || ||| Sbjct 298848 TCCGAGGGTTCAACCTCGAACGTGATGGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGC 298907 Query 193359 AT 193360 || Sbjct 298908 AT 298909 >seq33 Length=41749222 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || || || | ||| || | || || || || || || | ||| Sbjct 34672221 ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTC 34672280 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| |||||||| ||||| || || |||| || | |||| ||||| Sbjct 34672281 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTG 34672340 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||||| || || || || ||||| || || || || || || || || ||| Sbjct 34672341 TCCGAGGGTTCAACCTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGC 34672400 Query 193359 AT 193360 || Sbjct 34672401 AT 34672402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899583158617200