Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq42 87.8 3e-12 >seq42 Length=9663327 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 18373 ACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATA 18432 ||| || || |||| |||||||| || | || || | |||||||||||||| || || Sbjct 3435454 ACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAATGTA 3435395 Query 18433 AGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACT 18492 ||| ||||| | | | |||||||||||||||||| ||||||| || || || || | Sbjct 3435394 AGTATCGATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCC 3435335 Query 18493 ATAAAA 18498 ||| || Sbjct 3435334 ATAGAA 3435329 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 18373 ACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATA 18432 ||| || || |||| |||||||| || | || || | |||||||||||||| || || Sbjct 3436340 ACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAATGTA 3436281 Query 18433 AGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACT 18492 ||| ||||| | | | |||||||||||||||||| ||||||| || || || || | Sbjct 3436280 AGTATCGATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCC 3436221 Query 18493 ATAAAA 18498 ||| || Sbjct 3436220 ATAGAA 3436215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731814044886000