Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq17 109 1e-18 seq9 96.9 7e-15 seq38 93.3 8e-14 seq7 84.2 4e-11 >seq17 Length=65020687 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || ||||| | | | ||| || ||| || || ||||| Sbjct 35302157 ACCACCACGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGA 35302216 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || ||||| |||| || || ||||||||||| | ||||| |||||||| || Sbjct 35302217 CAAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 35302276 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || ||| ||||| ||||| || || ||| || Sbjct 35302277 AATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAAC 35302336 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || || | || || | || |||||||| Sbjct 35302337 CTCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq9 Length=86001432 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || ||||| | || | ||| || ||| || || ||||| Sbjct 39797618 ACCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 39797559 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||| || || ||||||||||| | ||||| |||||||| || Sbjct 39797558 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 39797499 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||| | || || || || ||||| ||||| || || | ||| || Sbjct 39797498 AATTCCTTCCTTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAAC 39797439 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||||| || | | || || | || |||||||| Sbjct 39797438 CTCGAGCGGGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq38 Length=14253900 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | || | ||| || ||| || || ||||| || || || |||| ||| Sbjct 298701 ACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 298760 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || || ||||||||||| | ||||| |||||||| || |||||||| ||||| || Sbjct 298761 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 298820 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || ||||| ||||| || || | ||| || || | || |||||||| Sbjct 298821 ATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATGGTTTTC 298880 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | | || || | || |||||||| Sbjct 298881 CCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq7 Length=85103860 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | || | || | || | |||||| ||| || || || Sbjct 11188159 ATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCG 11188100 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| | ||||| || ||||| Sbjct 11188099 GACAGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGG 11188040 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || | || Sbjct 11188039 GGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 11187980 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||| ||||||||||| ||||| | ||| ||||||||| Sbjct 11187979 ACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCATT 11187929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984400092527250