Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 2e-11 >seq4 Length=96435083 Score = 86.0 bits (94), Expect = 2e-11 Identities = 197/291 (68%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 133181 CACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTT 133240 ||||||||||| || | || || | ||||||||| ||| | | || || ||| Sbjct 65464682 CACTGGGAAGCGCTGAAACCCGACGAGAGACATTTTATATCTCACGTCCTGGCTTTCTTT 65464623 Query 133241 GCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAA 133300 |||||||||||||| || || |||||| | | || || | ||||||||| Sbjct 65464622 GCTGCGAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCGCTTCAGCCAAGAAGTTCAG 65464563 Query 133301 CTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATAT-CCATTCT-- 133357 | | || ||||| || ||||| | || ||||| |||||||| || |||||| Sbjct 65464562 GTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATAACATTCTGA 65464503 Query 133358 ATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTA 133417 | | | ||| ||| || ||||||||||| |||||| || ||| | | | || Sbjct 65464502 AATGTACAGTCTCCTC--ATCGATACTTACATTAAAGATTCCAAAGAGAGGGAATATCTC 65464445 Query 133418 TTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 ||||| || ||| | || | | |||||| | |||||||| | |||||||| Sbjct 65464444 TTCAATGCTATT-GAGACAATGCCTTGTGTGAAAAAGAAGGCCGACTGGGC 65464395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471698136704895