Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7 138 7e-28 seq2 131 1e-25 seq40 109 4e-19 seq33 95.1 8e-15 seq38 91.5 1e-13 >seq7 Length=85103860 Score = 138 bits (152), Expect = 7e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 11188156 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 11188097 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| || || || || |||||||| | |||||||| | || Sbjct 11188096 AGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11188037 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || ||| ||||| || || || | ||| ||| ||||| Sbjct 11188036 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGA 11187979 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || | ||| || |||||||||||||| Sbjct 11187978 CCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 11187930 Score = 138 bits (152), Expect = 7e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 11188384 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 11188325 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||| |||| ||||| | || || || |||||||| | |||||||| | || Sbjct 11188324 AGGGTGCAGCCATCTTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11188265 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || ||| ||||| || || || | ||| ||| ||||| Sbjct 11188264 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGA 11188207 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || | |||||||| |||||||||||||| Sbjct 11188206 CCTCGAGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||| ||||| ||||| || | | || |||| |||| Sbjct 35411311 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCATCT 35411252 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||| ||||| |||||||| | || | ||||| || || Sbjct 35411251 TCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 35411192 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| ||| || | | ||| |||||| Sbjct 35411191 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTC 35411132 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| | ||||| ||||| Sbjct 35411131 TTGCCAGTCAGGGTCTTCATGAAGATTTGCAT 35411100 >seq2 Length=98408828 Score = 131 bits (144), Expect = 1e-25 Identities = 150/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 34780 GGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCC 34839 |||| ||| ||||| ||||| ||||| || ||| |||| |||| ||||| || || || Sbjct 12204387 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCC 12204328 Query 34840 GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTT 34899 || |||||||| | |||||||| | || | ||||||||||| | || ||| || Sbjct 12204327 TGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCTT 12204268 Query 34900 GACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 ||| || || || | ||| ||| |||||| || | ||| |||||||| || || ||| Sbjct 12204267 GAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGG 12204210 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| |||||||||||||| Sbjct 12204209 GTCTTCACAAAGATCTGCAT 12204190 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| |||| ||| |||| |||||| || ||||| ||||| || | | || || Sbjct 61256667 CTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCA 61256608 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || ||||||||||| | ||||| || | || | || ||||| Sbjct 61256607 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 61256548 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||||| | |||| | || || || || || | || ||| Sbjct 61256547 TCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 61256488 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| |||||||| | || |||||||| Sbjct 61256487 GTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 >seq40 Length=10521589 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34771 CAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAG 34830 |||||| | ||| ||| ||||| ||||| ||||| || || | | |||| ||||| Sbjct 9790142 CAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAG 9790083 Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 | ||| ||||| || ||||| | || ||||| | || | || |||||||| | || Sbjct 9790082 CTACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT 9790023 Query 34891 TTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||||| || || || | ||| ||| |||||| |||| || |||||||| Sbjct 9790022 CTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 9789965 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTG 34984 || || |||||||| ||||||||||||||| | ||| Sbjct 9789964 CCTGTCAGGGTCTTCACAAAGATCTGCATGTTGGTG 9789929 >seq33 Length=41749222 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| |||| |||| |||| |||||| || ||||| ||||| || | | || || Sbjct 34672188 CTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCA 34672247 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || ||||||||||| | ||||| || | || | || ||||| Sbjct 34672248 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 34672307 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||||| | |||| | || || || || || | || ||| Sbjct 34672308 TCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 34672367 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| |||||||| || || |||||||| Sbjct 34672368 GTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq38 Length=14253900 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| |||| |||| |||| |||||| || ||||| ||||| || | | || || Sbjct 298695 CTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCA 298754 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || || |||||||| | ||||| || | || | || ||||| Sbjct 298755 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 298814 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||||| | |||| | || || || || || | || ||| Sbjct 298815 TCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATG 298874 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||| | ||||||||||| || |||||||| Sbjct 298875 GTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325667653971365