Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 >seq7 Length=85103860 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| ||||| ||||| || || ||||| ||| | || ||| | | Sbjct 11187929 AATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 11187988 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || |||||| || || |||||| | ||| || || Sbjct 11187989 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 11188048 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || ||||||||||| || | | || || | |||||||| Sbjct 11188049 GCAGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 11188108 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || || ||||| || ||||| |||| Sbjct 11188109 CATCCAGAAAGAGTCCACCCTGCACCTGGT 11188138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398846003594815