Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq17 127 2e-24 seq7 123 2e-23 seq38 118 8e-22 seq33 118 8e-22 seq9 109 4e-19 >seq17 Length=65020687 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || |||||||||||| |||| || ||||| ||||| || || | | || || ||| Sbjct 35302172 CAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCATC 35302231 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| || |||||||| || ||||| || || || || Sbjct 35302232 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 35302291 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||||||| |||||| |||||| || ||||| || || || || || || Sbjct 35302292 CTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATGGT 35302351 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || | ||| || || || |||||||| Sbjct 35302352 TTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq7 Length=85103860 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||| |||| || || ||||| ||||| || ||||| || || | Sbjct 11188156 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 11188097 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||| ||| | |||| || ||||| || || || Sbjct 11188096 AGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11188037 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| |||||| | || | |||||| | || || Sbjct 11188036 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 11187977 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || |||||||||||||| ||||| ||||||||| Sbjct 11187976 TCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCATT 11187929 >seq38 Length=14253900 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||||||||||||||| ||||| || ||||| ||||| || || | | || || ||| Sbjct 298697 CAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 298756 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| || |||||||| || ||||| || || || || Sbjct 298757 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 298816 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || |||||| |||||| |||||| || |||| || || | || || || Sbjct 298817 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATGGT 298876 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || | | ||| || || || |||||||| Sbjct 298877 TTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq33 Length=41749222 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || |||||||||||| ||||| || ||||| ||||| || || | | || || ||| Sbjct 34672190 CAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 34672249 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || |||||||| | |||| || |||||||| || ||||| || || || || Sbjct 34672250 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 34672309 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || |||||| |||||| |||||| || |||| || || || || || || Sbjct 34672310 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 34672369 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || | ||| || || || |||||||| Sbjct 34672370 TTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq9 Length=86001432 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || |||||||||||| ||||| || ||||| ||||| || || | | || || ||| Sbjct 39797603 CAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 39797544 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| || |||||||| || ||||| || || || | Sbjct 39797543 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTACC 39797484 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || |||||| |||||| |||||| || |||| || || || | || || Sbjct 39797483 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGGGATGGT 39797424 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || | | ||| || || || |||||||| Sbjct 39797423 TTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385189458068235