Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq38 127 4e-24 seq7 123 5e-23 seq40 120 6e-22 seq33 116 7e-21 seq17 116 7e-21 seq2 109 1e-18 seq9 107 4e-18 seq16 86.0 1e-11 >seq38 Length=14253900 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || || || || || || || || || || || || ||||| | | | | || || Sbjct 298697 CAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 298756 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| || || || ||||||||||| || || || ||||| ||||| |||||||||||||| Sbjct 298757 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 298816 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || ||||| || || |||||||| || || || ||||| || || || || || || Sbjct 298817 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATGGT 298876 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | | |||||||| || |||||||| Sbjct 298877 TTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq7 Length=85103860 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | |||||| || || |||||||| || || |||| | | Sbjct 35411326 CCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAG 35411267 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || ||||||||||| |||| || || || || || Sbjct 35411266 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 35411207 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || ||||| || ||||| || || || || ||||| || ||| | || || || Sbjct 35411206 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 35411147 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || |||||||| |||| ||||| | || || |||||| Sbjct 35411146 TTCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCATGAAGATTTGCATT 35411099 >seq40 Length=10521589 Score = 120 bits (132), Expect = 6e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||||| ||| || |||||||| || || || || || | | | || || || || | Sbjct 9790139 GTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAGCTA 9790080 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || || ||||| || || || || || || || || || |||||||| ||||| ||||| Sbjct 9790079 CTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 9790020 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| || || || ||| | || || || || | ||| || ||||||||||| Sbjct 9790019 GGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGT 9789960 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| |||||||| Sbjct 9789959 CAGGGTCTTCACAAAGATCTGCAT 9789936 >seq33 Length=41749222 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || || || || || || || || || || ||||| | | | | || ||||| Sbjct 34672194 ACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 34672253 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||||| ||||| || || || ||||| ||||| |||||||||||||| || Sbjct 34672254 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 34672313 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || || |||||||| || || || ||||| || || | || || || || Sbjct 34672314 ATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTT 34672373 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| || || |||||||| Sbjct 34672374 CCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq17 Length=65020687 Score = 116 bits (128), Expect = 7e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || || || || || || ||||| | | | | | ||||| || || || |||||| Sbjct 35302191 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCATCTTCCAGCTGCTTGCCAGCA 35302250 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| || || || ||||| ||||| |||||||||||||| || ||||| ||||| ||| Sbjct 35302251 AAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTGACA 35302310 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 ||||| || || || |||| || || | || || || || ||||| | ||||| Sbjct 35302311 TTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTC 35302370 Query 82797 ACAAATATCTGCAT 82810 || || |||||||| Sbjct 35302371 ACGAAAATCTGCAT 35302384 >seq2 Length=98408828 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 || || || || || || || || || ||||| | | | | || ||||| || || || Sbjct 61256652 AGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTG 61256593 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| || || || ||||| ||||| |||||||||||||| || ||||| || Sbjct 61256592 CCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 61256533 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || || ||||| || || | || || || || || || | Sbjct 61256532 TTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGG 61256473 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| | || |||||||| Sbjct 61256472 GTCTTCATGAAAATCTGCAT 61256453 >seq9 Length=86001432 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || || || || || || || || || || ||||| | | | | || ||||| Sbjct 39797599 ACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 39797540 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||||||||||| || || || ||||| ||||| |||||||||||| | || Sbjct 39797539 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTACCCTGG 39797480 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || || |||||||| || || || ||||| || || | | || || || Sbjct 39797479 ATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGGGATGGTTTTC 39797420 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | | ||||| || || |||||||| Sbjct 39797419 CCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq16 Length=69618829 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 || || || || || || || || || ||||| | | | | | ||||| | || || Sbjct 24326417 AGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCTATCTTCCAACTGCTTG 24326476 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| || || || ||||| ||||| |||||||||||||| || ||||| || Sbjct 24326477 CCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 24326536 Query 82731 TTTACATTTTCAATCGTATC 82750 || |||||||| || || || Sbjct 24326537 TTGACATTTTCTATAGTGTC 24326556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981747507847565