Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 132 5e-26 seq2 131 2e-25 seq40 123 2e-23 seq33 114 1e-20 seq38 109 5e-19 seq9 96.9 3e-15 seq17 95.1 1e-14 >seq7 Length=85103860 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| ||| || ||| | || || |||| ||||| Sbjct 11188355 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAGCCATCTTCCAGCTCTTTGCC 11188296 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| |||||||| ||||||| ||| Sbjct 11188295 TGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 11188236 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || |||| ||||| ||| ||||| |||| || Sbjct 11188235 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGGGT 11188176 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 11188175 CTTCACAAAGATCTGCAT 11188158 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | || || ||||| |||| Sbjct 11188127 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 11188069 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || ||||||||||||||||| ||||||| || Sbjct 11188068 CTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCT 11188009 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | ||||| ||| || || || | | Sbjct 11188008 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGG 11187949 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 11187948 TTTTCACAAAGATCTGCAT 11187930 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||||| | ||| | | | || || |||||||||| Sbjct 35411297 GGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 35411239 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| || |||||||| || || || |||||| || Sbjct 35411238 CAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCT 35411179 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| |||||||||| | | ||||| ||| ||||| ||||| | Sbjct 35411178 TGACGTTCTCAATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTCTTGCCAGTCAGGG 35411119 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || | ||| || ||||| Sbjct 35411118 TCTTCATGAAGATTTGCAT 35411100 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| ||||||||||| || |||||||| || ||||| |||||| ||||| | | Sbjct 36033226 ATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTC 36033285 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| |||||||||| || | ||||| ||| ||||||||||| || || ||| Sbjct 36033286 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 36033345 Query 133650 AAAATCTGCAT 133660 || || ||||| Sbjct 36033346 AAGATTTGCAT 36033356 >seq2 Length=98408828 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | || || ||||| |||| Sbjct 12204387 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 12204329 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || ||||| || |||||||| ||||||| || Sbjct 12204328 CTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCT 12204269 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 12204268 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 12204209 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 12204208 TCTTCACAAAGATCTGCAT 12204190 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||| | | ||||||||| || || || ||||| || || || | | | || || || Sbjct 61256658 AAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCA-TCTTCCAG 61256600 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || |||| |||||| || ||||| || |||||||| || ||| Sbjct 61256599 CTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 61256540 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | ||| || || |||| |||| |||||| || Sbjct 61256539 CTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCC 61256480 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || | |||||||||||| Sbjct 61256479 CGTAAGGGTCTTCATGAAAATCTGCAT 61256453 >seq40 Length=10521589 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| ||| | || ||||| |||| |||||| Sbjct 9790132 GTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAGCTACTTGCCG 9790073 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||| |||||||| ||||||||||||||||| |||||| |||| Sbjct 9790072 GCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 9790013 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| ||||||| || || | |||| ||| ||||| ||||| || Sbjct 9790012 ACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTC 9789953 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 9789952 TTCACAAAGATCTGCATG 9789935 >seq33 Length=41749222 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| || || || ||||| || || || | | | || || || Sbjct 34672197 AAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCA-TCTTCCAG 34672255 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || |||| |||||| || ||||| || |||||||| || ||| Sbjct 34672256 CTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 34672315 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | ||| || || |||| |||| |||||| || Sbjct 34672316 CTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTTCC 34672375 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 34672376 CGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq38 Length=14253900 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| || || || ||||| || || || | | | || || || Sbjct 298704 AAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCA-TCTTCCAG 298762 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || |||| |||||| || ||||| || |||||||| || ||| Sbjct 298763 CTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 298822 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | ||| || || |||| |||| |||||| || Sbjct 298823 CTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATGGTTTTCCC 298882 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||||||||||||||| Sbjct 298883 CTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq9 Length=86001432 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| || || || ||||| || || || | | | || || || Sbjct 39797596 AAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCA-TCTTCCAG 39797538 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || |||| |||||| || ||||| || |||||||| | ||| Sbjct 39797537 CTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTACCCTGGAT 39797478 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | ||| || || |||| | || |||||| || Sbjct 39797477 CTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGGGATGGTTTTCCC 39797418 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || |||||||||||||| Sbjct 39797417 CATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq17 Length=65020687 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | | ||||||| || || || ||||| || || || ||| || || | Sbjct 35302179 AAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT--ACGGTCATCTTCCA 35302236 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| || | || |||| |||||| || ||||| || |||||||| || || Sbjct 35302237 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 35302296 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| |||| | || | ||||| | | | || || |||| |||| |||||| | Sbjct 35302297 TCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATGGTTTTTC 35302356 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || |||||||||||||| Sbjct 35302357 CTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483382519115400