Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq8 268 1e-66 seq2 95.1 1e-14 >seq8 Length=88571779 Score = 268 bits (296), Expect = 1e-66 Identities = 590/878 (67%), Gaps = 16/878 (2%) Strand=Plus/Plus Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 |||||| | ||||||||| || || || || ||||||||||| || || | || || | Sbjct 47381548 TCCGAAAATGCACACGGAGCGTACATGGACTCCGCTGCACGGTGGGTAAGGAGCGCCTTT 47381607 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||| || || |||| |||||||| || ||||||| || ||| | ||||||||| Sbjct 47381608 GGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCGGA 47381667 Query 162300 GGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||| ||||| | || || | | ||||| || | || | || || | || Sbjct 47381668 CAAGTCATACTTATGGCTCGAGGGGAGAGAACCAGGGACTTCAGGGATCCTTTGGATGGT 47381727 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA- 162418 ||||| |||| || ||||| |||||||| |||| | |||||||||||||| || Sbjct 47381728 GGCCCAGAGGTACTCATCTGGGCTATACGTGTCCTGTGCCCACTCCATGAACTTTTGGAT 47381787 Query 162419 --CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 || || || ||| | || ||||| ||| | || | |||||| ||||| Sbjct 47381788 GTCCCCATTTTC---TAGCACATAGCCTACGTATTCCCTACTGACCACAAAGTAGGCGCT 47381844 Query 162477 ACC--AGAAAACACGGGTATGCGTATAGGAGGGGGCT---CTTTGTCTTGACCCGTGTTG 162531 || |||||| | | || || | ||| || |||| ||||| | || ||||| Sbjct 47381845 GCCTGAGAAAAGAGGAGT-TGTG---AGG-GGCGGCTGGGCTTTGGCCACCCCAGTGTTT 47381899 Query 162532 ACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGAC 162591 | | | || || || || ||||| |||| ||||||| || ||| | | || | Sbjct 47381900 GTCAGCTTCCCGTCGACAACGGTGTGTCGCTTCTTCCACCTTTCCTCCTTGTTTGGAGGC 47381959 Query 162592 GGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCT 162651 | ||||| || || |||| ||| || | ||| || | | ||||| || Sbjct 47381960 ATCTTCTCGGTTTCCAGGTTGTTTTCGCCCAGGAATGACTTGAGTTTCCTGACCATTTCC 47382019 Query 162652 AGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACG 162711 || ||||| || || || ||||| | |||||||| || || | || ||||| || | Sbjct 47382020 AGGTTGGTTTTCAGAGGGAAGTCCATACCGCAGAGGTTGATCAAGTACTTCCAGTTTGCA 47382079 Query 162712 CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCG 162771 || | | |||||| ||| | ||||| || || ||||| || |||||||| ||||| Sbjct 47382080 CTCATGCTGTACAGGTCCCTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCAGGACGCA 47382139 Query 162772 TACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCC 162831 || | ||||||||||| | |||| |||||||| || | || || || | || ||| Sbjct 47382140 TAAATGACGCTCTCCAGCTGGCTGGCCACAAAGACGTTCTTCAAGCAGGACGCAATGCCC 47382199 Query 162832 ATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 |||| || | | || | || ||||| | || ||||| | ||| || | |||| Sbjct 47382200 GTCACCGCGGCTAAAAAGGGCTCCTCTGCTTTTTTGTCCACGTGAATGCAATAGAAATTC 47382259 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | ||||| | ||| || ||||| || || ||||| Sbjct 47382260 TGAGGCATATAGATGGCCCTCAGGAGCCTCTCAAGCATTTCAATCTTGTGATGAACCACT 47382319 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 || || ||||| ||||| || || |||||||| ||| |||| | || || |||||| Sbjct 47382320 ATGGAGTACGCGATGGGAAAGTCTGCCTCCTCTTTACTAAGAGGCTCTACAATATACTTG 47382379 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 || ||| | || | |||||||| |||||||| Sbjct 47382380 CGCATCCTGATGAAAGAGGCACAGTCACGGGTCATGTT 47382417 >seq2 Length=98408828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 9/205 (4%) Strand=Plus/Plus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACT-TGACTTTTAGG 171582 ||||| |||| |||||| || | |||||||||||||| ||||| | ||| | || || Sbjct 56210436 ACAGTGCCCAGGTGTAAAACCTGGCATATCACCTCCT----TCCCAATCTGAGTCTTGGG 56210491 Query 171583 ATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG--TT 171640 ||||| || | |||||||| || ||||| || ||||| || || || || | | Sbjct 56210492 GTCTTTGACCCGGAGAATGCTGGTGACAGACGTGGTCCCATTT-GA-GTGCAAGTGACTC 56210549 Query 171641 TTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTA 171700 | |||||||| || ||||| | || | | ||||| || |||| ||||| | Sbjct 56210550 TCGGTACTATTCTCAATTCCTGTCCCAGTGCCCTTCCAGGCGATGGCAGGGGCTGGGCGG 56210609 Query 171701 GCAGTAGCAGAGCAAGTTATGTTTA 171725 ||||| ||||||||||| ||||||| Sbjct 56210610 GCAGTCGCAGAGCAAGTGATGTTTA 56210634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578386195416000