Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7 107 1e-18 seq2 86.0 4e-12 seq40 84.2 1e-11 >seq7 Length=85103860 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | |||| || || ||| |||||| || |||||||| ||||| Sbjct 11188156 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 11188097 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| |||| | |||||| || | || Sbjct 11188096 AGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11188037 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | |||||| || | || || Sbjct 11188036 ATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 11187978 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || ||||| ||||| ||||| |||||||||||||| || Sbjct 11187977 CTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCATTGT 11187927 >seq2 Length=98408828 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33550 AGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTT 33609 || ||| |||||| || |||||||| ||||| || ||||| | || |||| ||||| Sbjct 12204389 AGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTG 12204330 Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 || ||||| |||| | |||||| || | || | ||| || ||||| || || || Sbjct 12204329 CCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTT-TGC 12204271 Query 33670 TTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 | |||| || | |||||| || | || || || | ||||| || || || || | Sbjct 12204270 CTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAG 12204211 Query 33729 CGTTTTTACAAAGATCTGCATAGT 33752 || || |||||||||||||| || Sbjct 12204210 GGTCTTCACAAAGATCTGCATTGT 12204187 >seq40 Length=10521589 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | || || || | |||| |||||| || |||||||| ||||| Sbjct 9790162 CCACCACACAGACAAAGCATCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 9790103 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | | || |||| | || |||||||| |||| | ||| || || | || Sbjct 9790102 GGGGTCCCTCCATCCTCCAGCTACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGG 9790043 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| || | |||||| || | || || Sbjct 9790042 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCGAC 9789984 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 |||| ||||| || || ||||| | || || |||||||||||||| |||||||| Sbjct 9789983 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT-GTTGGTGT 9789928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328678621483200