Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq33 114 3e-20 seq17 105 2e-17 seq2 105 2e-17 seq16 98.7 2e-15 seq40 96.9 8e-15 seq9 93.3 1e-13 seq7 87.8 4e-12 seq38 84.2 5e-11 >seq33 Length=41749222 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || |||||||| ||||| | || || ||| || ||||| | ||| Sbjct 34672387 AAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAAT 34672328 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || || || || |||||| Sbjct 34672327 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTC 34672268 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | |||||| | || |||||| |||| || ||||| Sbjct 34672267 GCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATCCAAAAGGAGTCC 34672208 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | || ||||||||||| Sbjct 34672207 ACCCTTCATTTGGTGTTGAGACTTCG 34672182 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || | ||||| || ||||| || |||| || ||||||| |||||| Sbjct 34672182 CGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 34672241 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || |||||||| |||| || ||| Sbjct 34672242 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGA 34672286 >seq17 Length=65020687 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| ||||| | || || ||| || ||||| | ||| Sbjct 35302369 AAGACCCTTACAGGAAAAACCATCACGCTCGAGGTTGAACTCTCGGACACTATAGAAAAT 35302310 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || || || || || ||||| Sbjct 35302309 GTCAAAGCCAA-GATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTT 35302251 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || |||||| ||||||||| | |||||| | || |||||| |||| || ||||| Sbjct 35302250 TGCTGGCAAGCAGCTGGAAGATGACCGTACTTTGTCTGACTACAACATCCAAAAGGAGTC 35302191 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||| | || ||||||||||| Sbjct 35302190 CATCCTTCATTTGGTGTTGAGACTTCG 35302164 >seq2 Length=98408828 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| | || || ||| || ||||| | ||| Sbjct 61256468 AAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAAT 61256527 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || || || || |||||| Sbjct 61256528 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTC 61256587 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | |||||| | || |||||| |||| || ||||| Sbjct 61256588 GCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATCCAAAAGGAGTCC 61256647 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||| | || ||||||||||| Sbjct 61256648 ACCCTTCGTTTGGTGTTGAGACTTCG 61256673 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || | |||| || ||||| || |||| || ||||||| |||||| Sbjct 61256673 CGAAGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 61256614 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || |||||||| |||| || ||| Sbjct 61256613 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGA 61256569 >seq16 Length=69618829 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || || || || || |||||||| || ||| Sbjct 24326532 AAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTCGCTGGCAAG 24326473 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||| | | |||||| | || |||||| |||| || ||||| || ||| | Sbjct 24326472 CAGTTGGAAGATAGCCGTACTTTGTCTGACTACAACATCCAAAAGGAGTCCACCCTTTAT 24326413 Query 206374 CTTGTTTTGAGACTTCG 206390 || || ||||||||||| Sbjct 24326412 CTGGTGTTGAGACTTCG 24326396 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || | ||| || ||||| || |||| || ||||||| |||||| Sbjct 24326396 CGAAGTCTCAACACCAGATAAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 24326455 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | | |||||||| |||||| || |||||||| |||| || ||| Sbjct 24326456 CGGCTATCTTCCAACTGCTTGCCAGCGAAGATCAGCCTCTGCTGA 24326500 >seq40 Length=10521589 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || |||||| | || || || |||| Sbjct 9789939 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGAC 9789998 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| || || ||| ||| Sbjct 9789999 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCATCAG 9790058 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || || ||||| ||| || |||| |||||| |||| | |||| |||||| || Sbjct 9790059 AGGCTGATATTTGCCGGCAAGTAGCTGGAGGATGGAGGGACCCCGTCCGACTACAACATC 9790118 Query 206353 CAGAAAGAGTCTACTCTTCACCT 206375 ||||||||||| ||| | ||||| Sbjct 9790119 CAGAAAGAGTCCACTTTGCACCT 9790141 >seq9 Length=86001432 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || ||||| ||| | | || || ||| || ||||| | ||| || ||| ||| Sbjct 39797418 GGGAAAACCATCCCGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTCAAGGCCAAG 39797477 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || || | || ||||||||| || || || || || ||||| || || |||||| Sbjct 39797478 ATCCAGGGTAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAG 39797537 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 |||||||||| | |||||| | || |||||| |||| || ||||| || ||||| | Sbjct 39797538 CTGGAAGATGGCCGTACTTTGTCTGACTACAACATCCAAAAGGAGTCCACCCTTCATTTG 39797597 Query 206377 GTTTTGAGACTTCG 206390 || ||||||||||| Sbjct 39797598 GTGTTGAGACTTCG 39797611 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || | ||||| || ||||| || |||| || ||||||| |||||| Sbjct 39797611 CGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 39797552 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| |||| || ||| Sbjct 39797551 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGA 39797507 >seq7 Length=85103860 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || || || ||||| |||| || || |||| Sbjct 11187933 CAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAGTGAC 11187992 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || ||||| || || ||| || Sbjct 11187993 ACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 11188052 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || || ||| |||||||||| | || || |||| |||||| || Sbjct 11188053 AGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 11188112 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || ||||| || Sbjct 11188113 CAGAAAGAGTCCACCCTGCACCTGGT 11188138 >seq38 Length=14253900 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 ||||||||| || | ||||| || ||||| || |||| || ||||||| |||||| | Sbjct 298690 GAAGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTAC 298749 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||| || || ||||| |||| || ||| Sbjct 298750 GGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGA 298793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181724874929535