Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq17 105 6e-18 seq38 102 8e-17 seq33 100 3e-16 seq2 100 3e-16 seq9 91.5 1e-13 seq73 86.0 6e-12 seq7 84.2 2e-11 >seq17 Length=65020687 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||||| | | | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 35302172 CAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCATC 35302231 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| || || | | |||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 35302232 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 35302291 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || ||| | | ||| | ||| || | | || || |||| ||| | || Sbjct 35302292 CTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATGGT 35302351 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || | |||||||||||| Sbjct 35302352 TTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq38 Length=14253900 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| ||||| ||||||||||| || ||||| |||||| Sbjct 298701 ACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 298760 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | |||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 298761 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 298820 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | ||| | ||| || | || || || |||| ||| | ||||| Sbjct 298821 ATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGATGGTTTTC 298880 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||| |||||||||||| Sbjct 298881 CCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq33 Length=41749222 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||||| | | | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 34672190 CAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 34672249 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| || || | |||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 34672250 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 34672309 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||| || | || || || |||| ||| | || Sbjct 34672310 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 34672369 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || | |||||||||||| Sbjct 34672370 TTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq2 Length=98408828 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||| | | | | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 61256665 CAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 61256606 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| || || | |||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 61256605 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 61256546 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||| || | || || || |||| ||| | || Sbjct 61256545 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 61256486 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || |||||||||||||| Sbjct 61256485 TTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 >seq9 Length=86001432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||||| | | | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 39797603 CAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 39797544 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| || || | | |||| || | ||| ||||| ||||| || ||||| ||| | Sbjct 39797543 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTACC 39797484 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||| || | || || || |||| || | || Sbjct 39797483 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGGGATGGT 39797424 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || | || || || | |||||||||||| Sbjct 39797423 TTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq73 Length=3316092 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | || |||||||||||||||||| |||| || ||||| ||| Sbjct 2392952 TACTCTACTATTTCTGTACATAGGTTGCTGCATTTTATGGTGCCCAGGTTCTGCTGGTTG 2392893 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || |||||||| || | |||||| |||||||||| || ||| ||||| Sbjct 2392892 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTC 2392843 >seq7 Length=85103860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||| || | | | |||||||| || |||||||||||| || ||| || Sbjct 11188145 GCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 11188086 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| |||||||| || | | |||| || | ||| || || || || |||||||| || Sbjct 11188085 ATCTTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTT 11188026 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || ||| || | | || | || || | ||||| || || | || | Sbjct 11188025 GTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGAT 11187966 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| | ||||| | || |||||||| Sbjct 11187965 GGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 11187930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476573458350600