Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq26 349 4e-91 seq2 206 3e-48 seq8 163 3e-35 seq13 145 9e-30 seq46 132 6e-26 seq5 123 3e-23 seq22 122 1e-22 seq4 84.2 3e-11 >seq26 Length=66536344 Score = 349 bits (386), Expect = 4e-91 Identities = 533/752 (71%), Gaps = 8/752 (1%) Strand=Plus/Plus Query 146826 AAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGG 146885 ||| ||||| | |||||||| || || ||| || | | ||| |||||||| || Sbjct 25929425 AAAGTCTTCAACTCTGAAATCATCAATTGTCTCAACTTTTCGAAGAATTTTGAGCTTTGG 25929484 Query 146886 GAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAG 146943 ||| |||| || | || || |||||||||||||||||||| | || || ||||| Sbjct 25929485 GAAAGGTCTTGGCT--CTCGCTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGTAA 25929542 Query 146944 ACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCC 147003 | || || || |||| |||||| ||||| ||||| ||||| ||||| || ||| || Sbjct 25929543 ATATGTGCATCTCCCAAGGTGTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTGCA 25929602 Query 147004 ACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCC 147063 | ||||||||| ||||| | |||||||| ||||||||||| || ||||||||||| || Sbjct 25929603 ATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATATCT 25929662 Query 147064 CCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGG 147123 |||||||||||||| |||||||| || |||||||| | || || || || || || ||| Sbjct 25929663 CCCGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCTACATAGAATTGACAGAGG 25929722 Query 147124 ATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACC 147183 ||||| || ||||| ||||| ||| || || ||||||||||| | | | Sbjct 25929723 GCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGATG 25929782 Query 147184 AGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACG 147243 | | ||| || ||| | | || || || || || ||||||||| || Sbjct 25929783 ATTCTTCTGTCATCAGGGCTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACT 25929842 Query 147244 CCCTGGCCCCCGTAGTTTG-TCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTG 147302 || || ||| ||| | || | || | || ||| || ||||| || |||||||| Sbjct 25929843 CCTTGACCCGAGTAATCTGATTCCATA-TCTTTGTAGTCTGCGCCAAAATGTCTCCACTG 25929901 Query 147303 GAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC-GAGAAGCCCGCCCGCTTGA 147361 ||| || || ||||| ||||| || || || || |||| ||||| ||| | | | Sbjct 25929902 GAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCA 25929960 Query 147362 GAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAG 147421 |||| || ||||||| | ||| |||||||| | |||||| |||| ||| || || |||| Sbjct 25929961 GAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAG 25930020 Query 147422 AGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCC 147481 | ||||| ||| ||| ||||| |||| ||||||||||| ||| |||| || || | Sbjct 25930021 CATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACACTC 25930080 Query 147482 TCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACA 147541 ||||| || ||||| || || | || ||||| || ||| |||| || |||| Sbjct 25930081 GTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGTTGTATCTCACCTGCATGCCGAACA 25930140 Query 147542 CAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 | |||| ||||| |||||||| | ||||||| Sbjct 25930141 CCGACAAGGTGCCGGTGCCCGTGCGGTCCTCC 25930172 >seq2 Length=98408828 Score = 206 bits (228), Expect = 3e-48 Identities = 237/319 (74%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||| || ||||||||||| ||||||| ||||||| || ||| | | ||| || ||| Sbjct 56213045 GTGGTCACGCAGGATGAGAGAAAGCTGCTGCACACGCCTGCATCCTTAAGATGTTCTCTG 56212986 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || || || ||||||| || |||||||||| || | | ||||| Sbjct 56212985 AAACGCTCCCAAGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAA 56212926 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| ||||||| ||| || || || |||||||| || |||| |||| | Sbjct 56212925 AACATGGTCACTTACAGCAAAGCCCATGGAGTTGTAGTCCAGCCTGCATATAGAGACAGG 56212866 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||| |||| |||||| ||| ||| |||||| || ||||| || ||| | Sbjct 56212865 GTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACACAACCCTG 56212806 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || |||||||| ||||||| || ||||| || || |||| |||||||| ||||| ||| Sbjct 56212805 GACGACGAGGGCTGCTACATGTGTCTCTTCAATACTTTTGTTTCTGGGAAGATCTCAGGG 56212746 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 56212745 ACAGCCTGCCTCACCCTCT 56212727 Score = 145 bits (160), Expect = 9e-30 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| |||||||| || Sbjct 56210680 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 56210621 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || |||||| | ||| ||| |||||| Sbjct 56210620 TCTGCGACTGCCCGCCCAGCCCCTGCCATCGCCTGGAAGGGCACTGGGACAGGAATTGAG 56210561 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || | || || ||||| || || ||||| ||||| | |||| Sbjct 56210560 AATAGTACCGAGAGTCACTTGCACTCAAATGGGACCACGTCTGTCACCAGCATTCTCCGG 56210501 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| | || |||||||| || ||||| || | |||||||| Sbjct 56210500 GTCAAAGACCCCAAGACTCAGATTGGGAAGGAGGTGATATGCCAGGTTTTACACCTGGGC 56210441 Query 171633 AATGTAACTAACT 171645 | ||| | | ||| Sbjct 56210440 ACTGTGATTGACT 56210428 >seq8 Length=88571779 Score = 163 bits (180), Expect = 3e-35 Identities = 213/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| || || ||||| ||||| || || || || |||| Sbjct 15948558 GCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGC 15948616 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | ||||| || ||||||| | ||| |||||||| | |||||| Sbjct 15948617 AGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCC 15948676 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAA 147461 |||| ||| || || |||| | ||||| ||| ||| ||||| |||| |||||||| Sbjct 15948677 TTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAA 15948736 Query 147462 AACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATA 147521 ||| ||| |||| || || | ||||| || ||||| || || | || ||||| || Sbjct 15948737 AACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGTTGTA 15948796 Query 147522 CCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 ||| |||| || ||||| |||| ||||| |||||||| | ||||||| Sbjct 15948797 TCTCACCTGCATGCCGAACACCGACAAGGTGCCGGTGCCCGTGCGGTCCTCC 15948848 Score = 149 bits (164), Expect = 7e-31 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||| ||||| | |||||||| |||||||| Sbjct 15942877 CTTTAGGCCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAA 15942936 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||| || |||||||||||||| |||||||| || |||||||| | Sbjct 15942937 GGGCACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATT 15942996 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 || || || || || || ||| ||||| || ||||| ||||| ||| || || | Sbjct 15942997 CGCTACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTGA 15943056 Query 147162 GGGGTTC 147168 |||| || Sbjct 15943057 GGGGGTC 15943063 >seq13 Length=46045664 Score = 145 bits (160), Expect = 9e-30 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 146981 GCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGA 147040 |||| ||||| || | ||| || | ||||||||||||||| | |||||||| ||||||| Sbjct 164543 GCTTTAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGA 164484 Query 147041 AGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGT 147100 |||| || ||||||||||| | || ||||||||||| |||||||| || ||||||| | Sbjct 164483 AGGGCACACCCAGGCCCATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTAT 164424 Query 147101 CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCG 147160 || || || || ||||| ||| ||||| || ||||| ||||| ||| || || | Sbjct 164423 TCGCTACATAGAATTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTG 164364 Query 147161 CGGGGTTC 147168 |||| || Sbjct 164363 AGGGGGTC 164356 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 147287 CAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC-GAG 147345 |||| |||||||||||||| || | ||||| |||||||| || || || ||| ||| Sbjct 160423 CAAAATGCCTCCACTGGAAACCACAAACTGGGCCCAGGTCCCCTTCCTGTC-ATGCAGAG 160365 Query 147346 AAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTG 147405 || ||| | | ||||| || ||||||| | ||| |||||||| | |||||| ||| Sbjct 160364 AATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTG 160305 Query 147406 GCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 | | | || ||||||| | ||||| ||| Sbjct 160304 GAGAACAGTTCCTTAGCATTTGTGGATCCC 160275 >seq46 Length=7398006 Score = 132 bits (146), Expect = 6e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || ||||| | | ||| || | ||||||||||||||| | ||| |||| ||||||||| Sbjct 7346703 TTTAGGCCTATGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGATGGCAATGTTGAAG 7346762 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 || || ||||||||||| || || ||||||||||| |||||||| || |||||||| | Sbjct 7346763 GGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTC 7346822 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCG 147162 | || || || || || ||| ||||| || ||||| ||||| ||| || || | | Sbjct 7346823 ACTACATAGAATTGACAGAGGGCATGGCAAGGGGGCAGTGCCATCAGGGGAAGATCTGAG 7346882 Query 147163 GGGTTC 147168 ||| || Sbjct 7346883 GGGGTC 7346888 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 147287 CAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC-GAG 147345 |||| |||||||||||||| || | ||||| |||||||| || || || ||| ||| Sbjct 7355222 CAAAATGCCTCCACTGGAAACCACAAACTGGGCCCAGGTCCCCTTCCTGTC-ATGCAGAG 7355280 Query 147346 AAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTG 147405 || ||| | | ||||| || ||||||| | ||| |||||||| | |||||| ||| Sbjct 7355281 AATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTG 7355340 Query 147406 GCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 | | | || ||||||| | ||||| ||| Sbjct 7355341 GAGAACAGTTCCTTAGCATTTGTGGATCCC 7355370 >seq5 Length=88288230 Score = 123 bits (136), Expect = 3e-23 Identities = 126/167 (75%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| |||||||||| ||||| ||||||||| ||| ||||||| Sbjct 21499149 AGGGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGA 21499208 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| || || ||||||||| | | || Sbjct 21499209 TGCCCCAGGCAGAGAACCA------------TGGCCCAGAAATCAAGGAGCATTTGAGCT 21499256 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || | ||||| ||| ||| Sbjct 21499257 CCCTGGGAGAGAAGCTGAAGACCCTCAGGAGGCAGCTGCAGCGCTGT 21499303 >seq22 Length=61813736 Score = 122 bits (134), Expect = 1e-22 Identities = 205/292 (70%), Gaps = 6/292 (2%) Strand=Plus/Plus Query 147288 AAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC-GAGA 147346 ||| || ||||||||||| || || ||||| |||||||| || || || |||| |||| Sbjct 17833940 AAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GTGCAGAGA 17833998 Query 147347 AGCCC--GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTT 147404 | ||| || | || |||||| ||||||| | ||| |||||||| | |||||| || Sbjct 17833999 ATCCCATGCTGTCCAGAAAAACTC--GGGACCCATTGGCATCCCAGATTCTCACTCCTTT 17834056 Query 147405 GGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAAC 147464 || ||| || || |||| | ||| | || ||| ||||| |||| ||||| |||||| Sbjct 17834057 GGAGGACAGTTCTTTAGCATTTGTGCATCCTTTGATAAACCACAGCAACTCCTTCAAAAC 17834116 Query 147465 CCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCT 147524 ||| || | || || | ||||| || ||||| | || | || ||||| || Sbjct 17834117 ACCCTTCTAGAACACTCGTTTGGTTGTGAGCAGAGAAAATTCATCTCTCAGGTTGTATGG 17834176 Query 147525 CGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCCCTG 147576 ||||| || |||| |||| ||||| ||||||| ||||||| || Sbjct 17834177 TGCCTGCATGCCTAACATCGACAAGGTGCCGATGCCCGTGTGGTCCTCCTTG 17834228 >seq4 Length=96435083 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 8602 TCCCTGTGGTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTA 8661 ||||| || || || |||||||| | |||| | || |||||| | ||||||| || Sbjct 96124103 TCCCTCTG-TATTCCCTGGTGTTCATCATTGGCATGATAGGCAATATCTTGGTGATTCTG 96124045 Query 8662 GTCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCC 8721 || |||| |||||| ||| || | | |||||||| ||||| ||| |||||||||||| Sbjct 96124044 GTTCTCACGCAGTACAGGAGACTTCGAAGCATGACCAGCATCTACCTATTCAACCTGGCC 96123985 Query 8722 CTTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 | ||| ||| | | ||| ||| | || || |||||| ||| Sbjct 96123984 ATCTCTGATCTGATCTTCCTTTCCACTTTGCCTTTCTGGATTGACT 96123939 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| ||||| |||| |||| |||||||||||| ||||||| Sbjct 96185875 TGGACCTGGCCATGCAGGTGACTGAGGTGATTGCCTACACCCACTGCTGTATCAACCCAA 96185934 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| || ||||| ||||| | ||||| Sbjct 96185935 TCATCTATGCCTTTGTTGGCGAGAGGTTCC 96185964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583441795044000