Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq5 107 3e-18 >seq5 Length=88288230 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 214085 TTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATC 214144 || ||| |||| | ||| | ||||| || ||||| ||| | ||| |||| |||| ||| Sbjct 40223537 TTTGCAGTGGGGCAGGAGGTCTTTGGTCTAGTGCCTGGTCTGATGATGTATGCCACCATC 40223596 Query 214145 TGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAAC 214204 ||| || | ||||||||||| || || || ||||| ||||| ||||| || || ||| || Sbjct 40223597 TGGTTGCGGGAGCACAACAGAGTGTGTGATGTGCTCAAACAGGAGCATCCTGAGTGGGAC 40223656 Query 214205 GACGAACAGCTGTTCCAGA 214223 || |||| ||| ||||||| Sbjct 40223657 GATGAACGGCTCTTCCAGA 40223675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723283520450400