Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 367 2e-96 seq26 343 2e-89 seq9 215 7e-51 seq87 212 9e-50 seq42 203 4e-47 seq73 114 2e-20 >seq4 Length=96435083 Score = 367 bits (406), Expect = 2e-96 Identities = 638/923 (69%), Gaps = 10/923 (1%) Strand=Plus/Plus Query 39275 AAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTTTTTGG 39331 |||||| |||| || | ||| ||| ||| || | |||||| || ||||| | || Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 || || || || || ||||| || || || || || ||||| | ||| |||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 39392 AAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTA 39451 || ||||| ||||| | | || | | || | || |||| || || | || Sbjct 65463977 AAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTG 65464036 Query 39452 TCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 39511 || || || ||||| ||||| ||||||| | || ||||| || ||||| || || Sbjct 65464037 TCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCACA 65464096 Query 39512 GGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT-ACGGCCTCTGTTATTATCGATGT 39570 || || |||||||| |||||||| | || | | || || || | | || || | Sbjct 65464097 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTA-GCCTCACTGCGTTGATAATGATTTCTTG 65464155 Query 39571 TACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACA 39630 |||| | || ||| || | | || | ||||| | |||||| ||| ||| Sbjct 65464156 TACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGCAACA 65464215 Query 39631 ATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 |||| ||||||||||| ||||| | ||||| ||||| || || |||||||| || || Sbjct 65464216 GTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCC 65464275 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 || || |||||||| ||||| | |||| || ||||| |||| ||| ||||| || || Sbjct 65464276 CCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCACAGC 65464335 Query 39751 TGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT----GTATCCACTTCTGTG 39806 ||||| || |||| || ||||| || | | || || | ||||| | | | Sbjct 65464336 AGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGCAGGG 65464395 Query 39807 CCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTT 39866 |||| || || ||||| || |||||||||||||| || |||||||| |||||||| | Sbjct 65464396 CCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCC 65464455 Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG-GATG 39925 | || | |||||||| || ||||| || | ||||| |||||||| ||||| ||| Sbjct 65464456 TCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTTATG 65464515 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 ||||| || || || || || || || ||||| | || || |||| || || ||| Sbjct 65464516 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGG 65464575 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 | || | ||| ||| |||||||| ||||| |||||||| || ||||| || |||| Sbjct 65464576 CTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCCAGG 65464635 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105 || || ||||||| | | || |||||| ||| | ||||| | ||||| || Sbjct 65464636 ACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTG 65464695 Query 40106 GATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCAT 40165 || | || || || ||||| ||||| || || ||||| || || |||||||| | ||| Sbjct 65464696 GAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCAG 65464755 Query 40166 ATATCACGATATTGTATTGGAAA 40188 |||||| | |||| || ||||| Sbjct 65464756 ATATCATGGTATTCGATGGGAAA 65464778 >seq26 Length=66536344 Score = 343 bits (380), Expect = 2e-89 Identities = 643/935 (69%), Gaps = 21/935 (2%) Strand=Plus/Plus Query 39275 AAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTTTTTGG 39331 |||||| |||| || | |||| ||| ||| || | ||| || || |||| | || Sbjct 31519072 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCACCTCCATCCTCTGA 31519131 Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 || ||||| || || ||||| | || || || || ||||| | ||| |||||||||| | Sbjct 31519132 TACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACG 31519191 Query 39392 AAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTA 39451 || ||||| ||||| | | || | | || | || |||| || || | | Sbjct 31519192 AAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCCAGCATAAGCGTG 31519251 Query 39452 TCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 39511 || || || ||||| ||||| ||||| | || ||||| | ||||| || || Sbjct 31519252 TCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACA 31519311 Query 39512 GGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGT- 39570 || || |||||||| |||||| | | | || || || | | || || ||| | Sbjct 31519312 GGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGT---TGATAAT-GATTTC 31519367 Query 39571 TACTACCTCATCACTC-GGTGGAT-GC--AATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||| || | ||| || || | || | | || | ||||| | |||||| ||| Sbjct 31519368 TTGTAC-TCTTTGCTCTGGCGGCTTGCTTACCAGGTGCCTGAACATCAGGCAGGCAAAGC 31519426 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| | ||||||||| ||||| | || || |||||||| || |||||||| | Sbjct 31519427 CACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCA 31519486 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || | || |||||||| ||||| | |||||||| ||||| ||||||||| |||||| Sbjct 31519487 GTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTA 31519546 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT----ATCCACTTC 39802 | || ||||| || |||| ||| ||||| || | || | || | | ||||| | Sbjct 31519547 CAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAATCCAACGC 31519606 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAA 39862 | ||||| ||||| | ||| || |||||||||||||| || |||||||| |||||||| Sbjct 31519607 AGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATAT 31519666 Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922 | | || | |||||||| ||| || || | ||||| |||||||| ||||| Sbjct 31519667 TCCCTCTCTTTGGAATCTTTAA----TGTGTCAATGAGGAGACTGTACATTTCAGAATGT 31519722 Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||||| || || || || || || || ||||| | || || |||| || || ||| Sbjct 31519723 TTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 31519782 Query 39983 GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCC 40042 | ||| | ||| ||| |||||||| ||||| |||||||| || ||||| || ||| Sbjct 31519783 TGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAAGCC 31519842 Query 40043 AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCT 40102 | || || ||||||| | | || || ||| ||| | | ||| | ||||| Sbjct 31519843 AGGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAGCGCTTCCTAGTGTTGAATATCC 31519902 Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || || | || || || ||||||||||| || | ||||| || || |||||||| | | Sbjct 31519903 TTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACATCTGC 31519962 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197 || |||||| | |||| || ||||| | ||| || Sbjct 31519963 CAGATATCATGGTATTCAATGGGAAAGACAACGAA 31519997 >seq9 Length=86001432 Score = 215 bits (238), Expect = 7e-51 Identities = 406/594 (68%), Gaps = 10/594 (2%) Strand=Plus/Plus Query 39275 AAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTTTTTGG 39331 |||||| |||| || | ||| ||| ||| || | |||||| || ||||| | || Sbjct 36369702 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 36369761 Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 || | || ||||| ||||| || || || || || ||||| | ||| |||||||||||| Sbjct 36369762 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 36369821 Query 39392 AAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTA 39451 | ||||||||||| | | || | | || | ||||||| || || | || Sbjct 36369822 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 36369881 Query 39452 TCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 39511 || || || ||||| ||||| ||||||| || | || || ||||| || || Sbjct 36369882 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 36369941 Query 39512 GGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTT 39571 || || |||||||| |||||||| | || || || || | | || || | | Sbjct 36369942 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACTGCGTTGATGATGATTTCTTGT 36370001 Query 39572 ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAA 39631 ||| | || ||| || | | || | ||||| | |||||| |||||||| Sbjct 36370002 ACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGTCACAG 36370061 Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 |||| ||||||||||| ||||| | ||||| ||||| || || |||||||| || || Sbjct 36370062 TGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCC 36370121 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 | || ||||||| ||||| | |||||||| |||| ||||||| ||||| | || Sbjct 36370122 AGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCCAG---AGAAGATCCCTTCCATAGCA 36370178 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCC 39808 ||||| || |||| || ||||| || | | || || | ||||| | | ||| Sbjct 36370179 GCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCAGGGCC 36370238 Query 39809 CAATCAGCTTTCTTCTT-TACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 || ||||| ||||| || |||||||||||||| || |||||||| ||||| || Sbjct 36370239 CAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATTGAAGAGCTA 36370292 >seq87 Length=2570995 Score = 212 bits (234), Expect = 9e-50 Identities = 342/490 (70%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 39702 GCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761 |||| ||||| | ||||||| ||||| |||||||| |||||||| || ||||| | | Sbjct 1819200 GCCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA 1819259 Query 39762 CAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTT 39818 ||| || ||||| || | | ||| || | ||||| | | | ||| || || | Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 39819 TCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTAT 39878 |||| || |||||||||||||| || |||||||| | ||||| | | || | || Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 39879 CTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCA 39938 |||||| || || | || | ||||| |||||||| ||||| |||||||| || || | Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 39939 TCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCG 39998 | || || || || ||||| || || || |||| || || ||| | ||| | || Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| ||||||||| |||| ||||||||| | |||| || |||| || || |||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| | | || |||||| ||| | ||||| | ||||| || || | || || | Sbjct 1819560 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 1819619 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 | ||||| |||| || || ||||| || || |||||| | | ||| |||||| | || | Sbjct 1819620 CCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACT 1819678 Query 40179 GTATTGGAAA 40188 || ||||| Sbjct 1819679 CGATAGGAAA 1819688 >seq42 Length=9663327 Score = 203 bits (224), Expect = 4e-47 Identities = 347/503 (69%), Gaps = 3/503 (1%) Strand=Plus/Minus Query 39275 AAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTTTTTGG 39331 |||||| |||| || | ||| ||| ||| || | |||||| || ||||| | || Sbjct 3436142 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3436083 Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 || | || ||||| ||||| || || || || || ||||| | ||| |||||||||||| Sbjct 3436082 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3436023 Query 39392 AAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTA 39451 | ||||||||||| | | || | | || | ||||||| || || | || Sbjct 3436022 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 3435963 Query 39452 TCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 39511 || || || ||||| ||||| ||||||| || | || || ||||| || || Sbjct 3435962 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 3435903 Query 39512 GGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTT 39571 || || |||||||| |||||||| | || || | ||| | | || || | | Sbjct 3435902 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAGGCGTTGATAATGATTTCTTGT 3435843 Query 39572 ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAA 39631 ||| | || ||| || | | || | ||||| | |||||| |||||||| Sbjct 3435842 ACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGTCACAG 3435783 Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 |||| ||||||||||| ||||| | ||||| ||||| || || |||||||| || || Sbjct 3435782 TGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCC 3435723 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 || || |||||||| ||||| | |||||||| ||||| |||||||| ||||| || || Sbjct 3435722 CGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCA 3435663 Query 39752 GCAAATGCAACAAGTCTCTCTCC 39774 ||||| || |||| || ||||| Sbjct 3435662 GCAAAGGCCACAACTCGTTCTCC 3435640 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT 39865 ||||| || || ||||| || |||||||||||||| || |||||||| |||||||| | Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 | || | |||||||| || ||||| || | ||||| |||||||| ||||| ||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 ||||| || || || || || || || ||||| | || || ||||||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAATTT 3436195 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT 39865 ||||| || || ||||| || |||||||||||||| || |||||||| |||||||| | Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 | || | |||||||| || ||||| || | ||||| |||||||| ||||| ||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || || || || || ||||| | || || |||| || || ||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 3435301 Score = 109 bits (120), Expect = 8e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| ||||| ||||||||||| ||||| || |||| || || ||||||| | Sbjct 3434561 TTTTCATTGACTATGCCATCACTAGCCGCAAAGAAAGCCAGGACGTGAGATATAAAATGT 3434502 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 | || |||||| ||| | ||||| | ||||| || || | || || || ||| Sbjct 3434501 CTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACCTCCTCA 3434442 Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATT 40183 || ||||| || || ||||| || || |||||||| | ||| |||||| | |||| || Sbjct 3434441 GCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATG 3434382 Query 40184 GGAAA 40188 ||||| Sbjct 3434381 GGAAA 3434377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 39275 AAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTTTTTGG 39331 |||||| |||| || | ||| ||| ||| || | |||||| || ||||| | || Sbjct 3438637 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3438578 Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 || || || || || ||||| || || || || || ||||| | ||| |||||||||||| Sbjct 3438577 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3438518 Query 39392 AAATCAAACGGATT 39405 || ||||||||||| Sbjct 3438517 AAGTCAAACGGATT 3438504 >seq73 Length=3316092 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||||| | Sbjct 2379301 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 2379242 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | |||||| | || || ||| | || ||||| || ||||| | Sbjct 2379241 TAGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2379182 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || |||||| | || || ||||| || |||||||||| Sbjct 2379181 GTTCCACTGTGGTGACTCCGCTGTACAGGCCTTGGATTACTTTCATGG 2379134 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || || || || ||||| || |||||||| || || || | ||| Sbjct 2397342 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAT 2397283 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 2397282 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2397223 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 2397222 TTTCTTATACCAT 2397210 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || || || | |||||||| || ||||| ||||| || ||||||||||| ||| Sbjct 2384997 GTCCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 2384938 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||||||| || | || ||||| | ||||| || | | || | ||||||| Sbjct 2384937 TAGGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 2384878 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 2384877 ATATGCTGTGGTCTTTC 2384861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686854405409400