Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq26 253 2e-62 seq8 125 6e-24 seq13 120 2e-22 seq46 107 2e-18 >seq26 Length=66536344 Score = 253 bits (280), Expect = 2e-62 Identities = 498/725 (69%), Gaps = 15/725 (2%) Strand=Plus/Plus Query 111574 TCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCATCAGCAACAAA 111632 |||||||| || || ||||| || ||||| || |||| | |||||| ||| | || Sbjct 25929384 TCCATCTTAATCGCTGGATGTGGATTATAAC-CTTCAATCTGAAAGTCTTCAACTCTGAA 25929442 Query 111633 ATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCG 111692 ||| ||||| ||||| |||| |||||| || ||||| || || | |||| ||| Sbjct 25929443 ATCATCAATTGTCTCAACTTTTCGAAGAATTTTGAGCTTTGGGAAAGGTCTTGGCTCTCG 25929502 Query 111693 GGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACA 111752 |||||| | || | |||| || ||||| | |||| ||| |||||||| | Sbjct 25929503 CTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGTAAATATGTGCATCTCCCAAGGT 25929562 Query 111753 ATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACT 111812 |||| || |||| |||| | || ||| |||||||||||||||| || || || Sbjct 25929563 GTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTGCAATCATGTAGGTAAGCAGGGC 25929622 Query 111813 GTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTG 111872 || || |||||||| || |||||||| ||||||||||||||||| || || || ||||| Sbjct 25929623 ATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTG 25929682 Query 111873 ACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGC 111932 || || || | | | ||||| |||||||| || |||| |||||||||| ||| Sbjct 25929683 GCAAGACAGCTCCCCATTCGCTACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGC 25929742 Query 111933 CATC----CCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCTG-CTGTAGCGA 111987 |||| | | |||| ||| ||||||||||| || |||||| | || | Sbjct 25929743 CATCAGGGGAAGATCTTTTGGGT-TCCAGGCACACATGATGATTCTTCTGTCATCAGGGC 25929801 Query 111988 TTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCC 112047 | | || ||| || || || || |||||||||| |||| ||| | ||||| Sbjct 25929802 TGGT-TTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGACCCGAGTAATCT 25929860 Query 112048 GCCTGACAT-CCAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCC 112106 | | ||| | |||| ||| ||| | |||||||| ||||| ||||||| || || Sbjct 25929861 G-ATTCCATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCC 25929919 Query 112107 CAGATCTCCCGGGGCTGT--ATCTGGAAATTGCTCTCTATTCAACAAATCACTTCTAATA 112164 |||| |||| |||| | | ||| | || | || ||||| | | Sbjct 25929920 CAGA--TCCCCTTCCTGTCGTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCA 25929977 Query 112165 TGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTA 112224 | | || ||| || |||||||||| || || | ||| | |||||||||||||| | Sbjct 25929978 TTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTG 25930037 Query 112225 ATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGT 112284 |||||||| |||||||| |||| ||| || |||||| |||||| ||| || || ||||| Sbjct 25930038 ATAAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGA 25930097 Query 112285 GGAAA 112289 ||||| Sbjct 25930098 GGAAA 25930102 >seq8 Length=88571779 Score = 125 bits (138), Expect = 6e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||||||||||||||| || || || || || |||||||| || |||||| Sbjct 15942884 CCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACA 15942943 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || ||||||||||||||||| || || || ||||| || || || | | | ||| Sbjct 15942944 CCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCGCTACA 15943003 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || |||||||| || |||| |||||||||| ||||||| Sbjct 15943004 TAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 15943042 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||| || |||||||||| || || | ||| | |||||||||||||| | ||||| Sbjct 15948659 ATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAA 15948718 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 ||| |||||||| |||| ||| || |||||| |||||| ||| || || ||||| ||||| Sbjct 15948719 CCACAGCAATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAA 15948778 >seq13 Length=46045664 Score = 120 bits (132), Expect = 2e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||||||||||||||| ||||| || || || |||||||| || |||||| Sbjct 164535 CCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACA 164476 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || ||||||||| |||| || || || || ||||| || || || | | | | ||| Sbjct 164475 CCCAGGCCCATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTATTCGCTACA 164416 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || ||||| || || |||| |||||||||| ||||||| Sbjct 164415 TAGAATTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATC 164377 >seq46 Length=7398006 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 111782 TGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTA 111841 ||||||||||||||||||| ||||| || || | |||||||| || ||||| || | Sbjct 7346713 TGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGATGGCAATGTTGAAGGGCACGCCCA 7346772 Query 111842 GGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGAC-ACATAA 111900 ||||||||||||| || || || || ||||| || || || | | | || ||||| Sbjct 7346773 GGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCAT-TCACTACATAG 7346831 Query 111901 AATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 |||||||| || |||| ||||| |||| ||||||| Sbjct 7346832 AATTGACAGAGGGCATGGCAAGGGGGCAGTGCCATC 7346867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391915338737605