Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 102 9e-17 seq42 93.3 5e-14 >seq4 Length=96435083 Score = 102 bits (112), Expect = 9e-17 Identities = 344/527 (65%), Gaps = 9/527 (2%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | ||| |||||| | | |||||| | |||||| || || Sbjct 65464747 TGTACAAGAAAGCCGAGGCTTCCTTCTGGACGGCTGAGGAGGTCGACCTCTCCAAGGATA 65464688 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | | ||||| ||| || ||||||| ||||| || |||||||| | Sbjct 65464687 TTCAACACTGGGAAGCGCTGAAACCCGACGAGAGACATTTTATATCTCACGTCCTGGCTT 65464628 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 |||| || ||||||||||| || || | ||||| | | | ||| | | || | Sbjct 65464627 TCTTTGCTGCGAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCGCTTCAGCCAAGAAG 65464568 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATC-CAC 59831 | ||| || | |||||||| | ||||| | | || || || || || Sbjct 65464567 TTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATAACAT 65464508 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 || || | |||| ||| | ||||||| | | || ||| | |||||| || | Sbjct 65464507 TCTGAAATGTACAGTCTCCTCATCGATACTTACATTAAAGATTCCAAAGAGAGGGAATAT 65464448 Query 59892 CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951 || ||| ||| || ||||| || || ||| | || || || |||||| ||| Sbjct 65464447 CTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCCGACTGGGCCCTGCGT 65464388 Query 59952 TGGAT---GAGTCCTGGA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGG 60006 ||||| | | | || || | | || | |||| | | || ||||| ||| |||| Sbjct 65464387 TGGATTGGGGGACAAAGAAGCTACCTATGGAGAACGAGTTGTGGCCTTTGC-TGCTGTGG 65464329 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 |||| ||| ||||||||||||| || |||| | || ||||||||||| || || || || Sbjct 65464328 AAGGGATCCTCTTCTCTGGCTCCTT-TGTGTCAATATTCTGGCTCAAGAAACGGGGACTG 65464270 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||||| ||||| | || ||||||||||| ||| | | || ||||| Sbjct 65464269 ATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATGAGGG 65464223 >seq42 Length=9663327 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/124 (79%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGC 60048 || ||||| ||| |||||||| ||||||||||||||||| || || | | || ||||||| Sbjct 3435655 GCCTTTGC-TGCTGTGGAAGGGATCTTCTTCTCTGGCTC-TTTTGCGTCAATATTCTGGC 3435712 Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108 |||| || || || || ||||| ||||| | || ||||||||||| ||| | | || | Sbjct 3435713 TCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATG 3435772 Query 60109 AGGG 60112 |||| Sbjct 3435773 AGGG 3435776 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/123 (79%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGC 60048 || ||||| ||| |||||||| ||||||||||||||||| || || | | || ||||||| Sbjct 3436541 GCCTTTGC-TGCTGTGGAAGGGATCTTCTTCTCTGGCTC-TTTTGCGTCAATATTCTGGC 3436598 Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108 |||| || || || || ||||| ||||| | || ||||||||||| ||| | | || | Sbjct 3436599 TCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATG 3436658 Query 60109 AGG 60111 ||| Sbjct 3436659 AGG 3436661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548481363692400