Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 113 5e-20 seq42 105 7e-18 seq5 104 3e-17 seq63 91.5 2e-13 seq26 84.2 2e-11 >seq4 Length=96435083 Score = 113 bits (124), Expect = 5e-20 Identities = 311/455 (68%), Gaps = 30/455 (7%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || || ||||| ||||| ||||| ||||| ||||| | || || || ||||| Sbjct 65463916 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCAT 65463975 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTT-CTC--CCCAAACTGTGCCATGAG 74578 |||| || || || | | | | |||| ||| || ||| | || ||| || Sbjct 65463976 GAAGTCAAATGGATTTTCTACTTTGAAAAT---CTTGCTGAACCCTAGCTCCAGCATAAG 65464032 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCA-TCCATGCCGATGAGTT 74637 | |||||||| |||| ||||||||| |||| | ||| | ||| |||||||| | Sbjct 65464033 CCTGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGC-GCAGTTCATCCCGATGAGCT 65464091 Query 74638 TGCAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCA-CCTCGCAAGCCCATTGGACAAT 74695 | ||| ||||| ||||| |||| |||||| ||| | |||| | | ||| | ||| Sbjct 65464092 T-CACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTG---CGTTG-ATAAT 65464146 Query 74696 -----CTTGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGC-GTCA 74748 ||||| |||||| ||| ||| | |||||| | | | | | || Sbjct 65464147 GATTTCTTGTAC---TCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCA 65464203 Query 74749 CGGCAAA-CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGG 74807 |||||| | | | || | || ||||||||||| || | || || ||||||| |||| Sbjct 65464204 -GGCAAAGCAACAG-TGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGG 65464261 Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAA 74866 |||||||| ||||| || ||||| | ||| || | || |||| ||||| ||| ||||| Sbjct 65464262 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACACA-AAGGAGCCAGAGAAGAG 65464320 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTT 74901 ||| ||||| ||| |||||||| |||| |||| Sbjct 65464321 GATCCCTTCCACAGCAGCAAAGGCCACAACTCGTT 65464355 >seq42 Length=9663327 Score = 105 bits (116), Expect = 7e-18 Identities = 302/447 (68%), Gaps = 28/447 (6%) Strand=Plus/Minus Query 74469 CCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCG 74528 || || ||||| ||||| ||||| ||||||||||| | || || || ||||| |||| Sbjct 3436076 CCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATGGAGTCA 3436017 Query 74529 AAAGGGTTCTTTGCACCGTAAATAGGCTT-CTCC--CCAAACTGTGCCATGAGGCGATCC 74585 || || || | | | | |||| ||| || || | || ||| || | ||| Sbjct 3436016 AACGGATTTTCTACTTTGAAAAT---CTTGCTGAATCCTAGCTCCAGCATAAGCCTGTCC 3435960 Query 74586 GCCACAAATTGAATGTACTGCGTCATTTC--TCCCGCATCCATGCCGATGAGTTTGCAC- 74642 ||||| |||| ||||| ||| |||| | | || | || |||||||| || ||| Sbjct 3435959 GCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTT--ATCCCGATGAGCTT-CACA 3435903 Query 74643 GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAAT-----CT 74697 ||||| ||||| |||| |||||| ||| | | | |||| | | || ||| || Sbjct 3435902 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATC-CTCAAGGCGTT--GATAATGATTTCT 3435846 Query 74698 TGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 ||| |||||| ||| ||| | |||||| | | | | | || |||||| Sbjct 3435845 TGTAC---TCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCA-GGCAAA 3435790 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 || || | || ||||||||||| || | || || ||||||| |||||||||||| Sbjct 3435789 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCAT 3435730 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 ||||| || ||||| | ||| || | || | || || || ||| ||||||||| |||| Sbjct 3435729 CAGTCCCCGTTTCTTGAGCCAGAATATTGACGCA-AAAGAGCCAGAGAAGAAGATCCCTT 3435671 Query 74875 CGACACACGCAAAGGCGACAAGGCGTT 74901 | ||| |||||||| |||| |||| Sbjct 3435670 CCACAGCAGCAAAGGCCACAACTCGTT 3435644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | || || ||||||| |||||||||||| ||||| || ||||| Sbjct 3436659 TCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 3436600 Query 74832 AACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || | || | || || || ||| ||||||||| ||||| ||| |||||||| Sbjct 3436599 AGCCAGAATATTGACGCA-AAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGGC 3436541 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 3436540 CACAACTCGTT 3436530 >seq5 Length=88288230 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 48014951 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 48014892 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||| ||||||||||||||||||||| Sbjct 48014891 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 48014832 Query 152149 ATCGT 152153 || || Sbjct 48014831 ATAGT 48014827 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 48014951 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 48014892 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||| || |||||||| || ||| Sbjct 48014891 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 48014832 Query 117425 ATCGT 117429 || || Sbjct 48014831 ATAGT 48014827 >seq63 Length=4383985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || |||| |||||||||||| ||||| || |||||||| Sbjct 1378996 GTAAAGATGTATCGAGGACTAGCCGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 1378937 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | |||||| | || || |||||| ||||||||||||||||| | | Sbjct 1378936 CCAATGGGTTGCAAGAGGTTCAAATTATTACTGCCCACAAAATTCTGAGCCAAATTGATA 1378877 Query 152149 ATCGT 152153 || || Sbjct 1378876 ATGGT 1378872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||| || ||||| |||| || || | ||||||||||||| || | ||||| || || Sbjct 1378997 AGTAAAGATGTATCGAGGACTAGCCGAATCCTTGCCACCATGCAGCCTGGTACCAAACTG 1378938 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | ||||||||||| || || ||||||||| || |||||||| |||| Sbjct 1378937 ACCAATGGGTTGCAAGAGGTTCAAATTATTACTGCCCACAAAATTCTGAGCCAAATTGAT 1378878 Query 117424 AATCGT 117429 ||| || Sbjct 1378877 AATGGT 1378872 >seq26 Length=66536344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | || || ||||| | |||||||||||| ||||| | ||||| Sbjct 31519441 TCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTG 31519500 Query 74832 AACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || | || | || || || ||| |||||||||| |||| ||| |||||||| Sbjct 31519501 AGCCAGAATATTGACGCA-AAAGAGCCAGAGAAGAAGATGTCTTCTACAGCAGCAAAGGC 31519559 Query 74891 GACAA 74895 |||| Sbjct 31519560 CACAA 31519564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547172667333000